Jatropha Genome Database

JcCB0367281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0367281.10 - phase: 0 /pseudo/partial
         (120 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12230.1 | Symbols:  | transaldolase, putative | chr1:4148050...    85   9e-18

>AT1G12230.1 | Symbols:  | transaldolase, putative |
           chr1:4148050-4150708 FORWARD
          Length = 405

 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 68/108 (62%), Gaps = 5/108 (4%)

Query: 1   MSLSLQSPPFSALYSKSFLQXXXXXXXXXXXXXXXXIFFKLQRSFPQI-----RASSGFS 55
           M LSLQSPP + L +                     + F L+RS P+I      +SS  S
Sbjct: 1   MPLSLQSPPCATLSASIRKGRWKTLAAGFSVTPLPAVNFSLRRSIPRILASASSSSSPAS 60

Query: 56  SSLDTGASTELDAVSSFSEIVPDTVIFDDFEKFPPTAATVSSSLLFGM 103
           SSL+ G + EL+AVS+FSEIVPDTV+FDDFE+FPPTAATVSS+LL G+
Sbjct: 61  SSLEAGENNELNAVSAFSEIVPDTVVFDDFERFPPTAATVSSALLLGI 108