Jatropha Genome Database

JcCB0367131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0367131.10 - phase: 0 /pseudo/partial
         (374 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19050.1 | Symbols: POK2 | POK2 (PHRAGMOPLAST ORIENTING KINES...   361   e-100
AT3G17360.1 | Symbols: POK1 | POK1 (PHRAGMOPLAST ORIENTING KINES...   221   5e-58

>AT3G19050.1 | Symbols: POK2 | POK2 (PHRAGMOPLAST ORIENTING KINESIN
            2); ATP binding / microtubule motor |
            chr3:6578047-6590106 FORWARD
          Length = 2771

 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/364 (54%), Positives = 255/364 (70%), Gaps = 27/364 (7%)

Query: 17   IAESRQTYSEEKEAEVKLLERSVEELECTINVLENKVDILKGXXXXXXXXXXXXXXXXHA 76
            IAESR+TY++E+E EVKLLE SVEELE TINVLENKV+++K                 H 
Sbjct: 2248 IAESRKTYADEREEEVKLLEGSVEELEYTINVLENKVNVVKDEAERQRLQREELEMELHT 2307

Query: 77   INHQMQNVKSADSDMKRHLDEKEKGLEEALKHIQILERDIAEKDAEITKCKAHISELNLH 136
            I  QM++ ++AD +MKR LDEK   L +A KHI+ LER+ A++  EIT+   HISELNLH
Sbjct: 2308 IRQQMESARNADEEMKRILDEKHMDLAQAKKHIEALERNTADQKTEITQLSEHISELNLH 2367

Query: 137  AEAQASEYKQKFKALEAMAEQVKPEGHFSHIANSSSNKLEKNASKSRGSGSPFKCIGLGL 196
            AEAQASEY  KFK LEAMAEQVKPE H S   +SS   L K + K RGSGSPF+CIGLG+
Sbjct: 2368 AEAQASEYMHKFKELEAMAEQVKPEIHVSQAIDSS---LSKGSGKPRGSGSPFRCIGLGI 2424

Query: 197  AQQMKSEKDEELTAARLRIEELESLAAGRQKEVFALNARLAAAESMTHDVIRDLLGVKLD 256
             QQM+SEKDEEL AARLRIEELE++ + RQKE+F LN++LA  +SMTHD+ R LLGVK +
Sbjct: 2425 TQQMRSEKDEELAAARLRIEELETVVSTRQKEIFLLNSKLAKVDSMTHDINRVLLGVKQN 2484

Query: 257  MTN---YVEKEELIK---------------------LKQQLNEFIEERRGWLEEIDRKQA 292
            +TN   +++ ++++K                     LKQQLNE+ E+R+GW+EEI+ KQ 
Sbjct: 2485 VTNCASFLDSQQVLKIAEMLQHNSSDSRERDLEVSHLKQQLNEYNEKRQGWIEEIEGKQT 2544

Query: 293  EMVAAQIALEKLHQRDQLLKAENDMLKMENVNNKKRLMELEGEVKKLSGQQNLQQRIHHH 352
            E+V AQI LE+  Q  QLLK EN++LK EN ++K ++MELEGEVKKLS  QN + R    
Sbjct: 2545 ELVTAQIKLEEHRQYQQLLKKENELLKKENFSHKIKVMELEGEVKKLSSHQNPEWRTRDQ 2604

Query: 353  AKVK 356
            A++K
Sbjct: 2605 ARIK 2608


>AT3G17360.1 | Symbols: POK1 | POK1 (PHRAGMOPLAST ORIENTING KINESIN
            1); ATP binding / microtubule motor |
            chr3:5936108-5946205 FORWARD
          Length = 2066

 Score =  221 bits (564), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 142/353 (40%), Positives = 216/353 (61%), Gaps = 36/353 (10%)

Query: 18   AESRQTYSEEKEAEVKLLERSVEELECTINVLENKVDILKGXXXXXXXXXXXXXXXXHAI 77
            +E+ + Y+E+KE EVK+LE SVEELE TIN+LE +V  +                   A+
Sbjct: 1646 SEASKIYAEQKEEEVKILEISVEELERTINILERRVYDMDEEVKRHRTTQDSLETELQAL 1705

Query: 78   NHQ----------MQNVKSADSDMKRHLDEKEKGLEEALKHIQILERDIAEKDAEITKCK 127
              +          M     +  + K H+  +  GL+ A   IQ+L++++AE+  EI + K
Sbjct: 1706 RQRLFRFENFTGTMVTTNESTEEYKSHIS-RSTGLQGAHSQIQVLQKEVAEQTKEIKQLK 1764

Query: 128  AHISELNLHAEAQASEYKQKFKALEAMAEQVKPEGHFSHIANSSSNKLEKNASKSRGSGS 187
             +ISE+ LH+EAQ+S Y++K+K LE M    K E   S  A + S+K EK++++SRGS S
Sbjct: 1765 EYISEILLHSEAQSSAYQEKYKTLEVMIRDFKLEDSSSSAAETISHKTEKSSTRSRGSSS 1824

Query: 188  PFKCIGLGLAQQMKSEKDEELTAARLRIEELESLAAGRQKEVFALNARLAAAESMTHDVI 247
            PF+CI +GL QQMK EKD+ELT AR+R+EELESL A +QKE+  LN R+AAA+SMTHDVI
Sbjct: 1825 PFRCI-VGLVQQMKLEKDQELTMARVRVEELESLLAVKQKEICTLNTRIAAADSMTHDVI 1883

Query: 248  RDLLGVKLDMTNYVE------------------------KEELIKLKQQLNEFIEERRGW 283
            RDLLGVK+D+T+Y E                        ++E++ LK+ ++   ++R   
Sbjct: 1884 RDLLGVKMDITSYAELIDQHQVQRVVEKAQQHAEEILSKEQEVMNLKRHIDYLFKDRESC 1943

Query: 284  LEEIDRKQAEMVAAQIALEKLHQRDQLLKAENDMLKMENVNNKKRLMELEGEV 336
            + E+++K  +++A QI+L++L +R QLL  +N+MLK +  N  ++L EL+  V
Sbjct: 1944 MSELNKKDTDVLATQISLDQLQERVQLLSMQNEMLKNDKSNLLRKLAELDRTV 1996