Jatropha Genome Database
- JcCB0365841.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0365841.10 - phase: 0 /pseudo
(116 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G32410.1 | Symbols: CESA1, RSW1 | CESA1 (CELLULOSE SYNTHASE 1... 178 6e-46
AT5G17420.1 | Symbols: IRX3, CESA7, ATCESA7, MUR10 | IRX3 (IRREG... 147 2e-36
AT2G25540.1 | Symbols: CESA10 | CESA10 (CELLULOSE SYNTHASE 10); ... 146 2e-36
AT5G09870.1 | Symbols: CESA5 | CESA5 (CELLULOSE SYNTHASE 5); cel... 129 3e-31
AT4G39350.1 | Symbols: CESA2, ATH-A, ATCESA2 | CESA2 (CELLULOSE ... 127 1e-30
AT5G64740.1 | Symbols: CESA6, IXR2, E112, PRC1 | CESA6 (CELLULOS... 124 8e-30
AT2G21770.1 | Symbols: CESA9, CESA09 | CESA9 (CELLULOSE SYNTHASE... 117 1e-27
AT5G05170.1 | Symbols: CESA3, IXR1, ATCESA3, ATH-B, CEV1 | CEV1 ... 117 2e-27
AT5G44030.1 | Symbols: CESA4, IRX5, NWS2 | CESA4 (CELLULOSE SYNT... 84 1e-17
AT4G18780.1 | Symbols: CESA8, IRX1, ATCESA8, LEW2 | IRX1 (IRREGU... 62 5e-11
>AT4G32410.1 | Symbols: CESA1, RSW1 | CESA1 (CELLULOSE SYNTHASE
1); cellulose synthase/ transferase, transferring
glycosyl groups | chr4:15641009-15646388 REVERSE
Length = 1081
Score = 178 bits (452), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 78/93 (83%), Positives = 86/93 (92%)
Query: 1 MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
MEASAG+VAGSYRRNELVRIRH+SD G KPLKN+NGQ CQICGD+VG+ +GD FVACNE
Sbjct: 1 MEASAGLVAGSYRRNELVRIRHESDGGTKPLKNMNGQICQICGDDVGLAETGDVFVACNE 60
Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
CAFPVCRPCYEYERKDGTQ CPQCKTR+RRH+G
Sbjct: 61 CAFPVCRPCYEYERKDGTQCCPQCKTRFRRHRG 93
>AT5G17420.1 | Symbols: IRX3, CESA7, ATCESA7, MUR10 | IRX3
(IRREGULAR XYLEM 3); cellulose synthase |
chr5:5736859-5741407 REVERSE
Length = 1026
Score = 147 bits (370), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 78/93 (83%), Gaps = 2/93 (2%)
Query: 1 MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
MEASAG+VAGS+ RNELV I + + PKPLKNL+GQ C+ICGD +G+T GD FVACNE
Sbjct: 1 MEASAGLVAGSHNRNELVVIHNHEE--PKPLKNLDGQFCEICGDQIGLTVEGDLFVACNE 58
Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
C FP CRPCYEYER++GTQ+CPQCKTRY+R +G
Sbjct: 59 CGFPACRPCYEYERREGTQNCPQCKTRYKRLRG 91
>AT2G25540.1 | Symbols: CESA10 | CESA10 (CELLULOSE SYNTHASE 10);
cellulose synthase/ transferase, transferring glycosyl
groups | chr2:10867070-10872077 REVERSE
Length = 1065
Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%)
Query: 7 MVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNECAFPVC 66
MVAGSYRR E VR R DSD G KPLK+LNGQ CQICGD+VG+T +G+ FVACNEC FP+C
Sbjct: 1 MVAGSYRRYEFVRNRDDSDDGLKPLKDLNGQICQICGDDVGLTKTGNVFVACNECGFPLC 60
Query: 67 RPCYEYERKDGTQSCPQCKTRYRRHKG 93
+ CYEYERKDG+Q CPQCK R+RRH G
Sbjct: 61 QSCYEYERKDGSQCCPQCKARFRRHNG 87
>AT5G09870.1 | Symbols: CESA5 | CESA5 (CELLULOSE SYNTHASE 5);
cellulose synthase/ transferase, transferring glycosyl
groups | chr5:3073356-3077974 FORWARD
Length = 1069
Score = 129 bits (324), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 55/93 (59%), Positives = 71/93 (76%)
Query: 1 MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
M ++AGS+ RNE V I D + + ++ L+GQTCQICGD + ++ G++FVACNE
Sbjct: 1 MNTGGRLIAGSHNRNEFVLINADESARIRSVEELSGQTCQICGDEIELSVDGESFVACNE 60
Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
CAFPVCRPCYEYER++G QSCPQCKTRY+R KG
Sbjct: 61 CAFPVCRPCYEYERREGNQSCPQCKTRYKRIKG 93
>AT4G39350.1 | Symbols: CESA2, ATH-A, ATCESA2 | CESA2 (CELLULOSE
SYNTHASE A2); cellulose synthase/ transferase,
transferring glycosyl groups | chr4:18297078-18301890
FORWARD
Length = 1084
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 55/93 (59%), Positives = 70/93 (75%)
Query: 1 MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
M ++AGS+ RNE V I D + + ++ L+GQTCQICGD + +T S + FVACNE
Sbjct: 1 MNTGGRLIAGSHNRNEFVLINADESARIRSVQELSGQTCQICGDEIELTVSSELFVACNE 60
Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
CAFPVCRPCYEYER++G Q+CPQCKTRY+R KG
Sbjct: 61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKG 93
>AT5G64740.1 | Symbols: CESA6, IXR2, E112, PRC1 | CESA6 (CELLULOSE
SYNTHASE 6); cellulose synthase/ transferase,
transferring glycosyl groups | chr5:25881555-25886333
FORWARD
Length = 1084
Score = 124 bits (312), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 70/93 (75%)
Query: 1 MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
M ++AGS+ RNE V I D ++ + ++ L+GQTCQIC D + +T G+ FVACNE
Sbjct: 1 MNTGGRLIAGSHNRNEFVLINADENARIRSVQELSGQTCQICRDEIELTVDGEPFVACNE 60
Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
CAFPVCRPCYEYER++G Q+CPQCKTR++R KG
Sbjct: 61 CAFPVCRPCYEYERREGNQACPQCKTRFKRLKG 93
>AT2G21770.1 | Symbols: CESA9, CESA09 | CESA9 (CELLULOSE SYNTHASE
A9); cellulose synthase/ transferase, transferring
glycosyl groups | chr2:9284837-9289495 FORWARD
Length = 1088
Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 67/93 (72%)
Query: 1 MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
M ++AGS+ RNE V I D + + + L+GQTC+IC D + +T +G+ F+ACNE
Sbjct: 1 MNTGGRLIAGSHNRNEFVLINADDTARIRSAEELSGQTCKICRDEIELTDNGEPFIACNE 60
Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
CAFP CRPCYEYER++G Q+CPQC TRY+R KG
Sbjct: 61 CAFPTCRPCYEYERREGNQACPQCGTRYKRIKG 93
>AT5G05170.1 | Symbols: CESA3, IXR1, ATCESA3, ATH-B, CEV1 | CEV1
(CONSTITUTIVE EXPRESSION OF VSP 1); cellulose synthase/
transferase, transferring glycosyl groups |
chr5:1530401-1535090 REVERSE
Length = 1065
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 59/74 (79%)
Query: 20 IRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNECAFPVCRPCYEYERKDGTQ 79
+ + ++ KP+KN+ QTCQIC DNVG T GD FVAC+ C+FPVCRPCYEYERKDG Q
Sbjct: 1 MESEGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQ 60
Query: 80 SCPQCKTRYRRHKG 93
SCPQCKTRY+R KG
Sbjct: 61 SCPQCKTRYKRLKG 74
>AT5G44030.1 | Symbols: CESA4, IRX5, NWS2 | CESA4 (CELLULOSE
SYNTHASE A4); cellulose synthase/ transferase,
transferring glycosyl groups | chr5:17714713-17719564
FORWARD
Length = 1049
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 45/61 (73%)
Query: 33 NLNGQTCQICGDNVGVTASGDTFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYRRHK 92
+ + + C++CGD V +G TFVAC+ C +PVC+PCYEYER +G + CPQC T Y+RHK
Sbjct: 17 SFSAKICKVCGDEVKDDDNGQTFVACHVCVYPVCKPCYEYERSNGNKCCPQCNTLYKRHK 76
Query: 93 G 93
G
Sbjct: 77 G 77
>AT4G18780.1 | Symbols: CESA8, IRX1, ATCESA8, LEW2 | IRX1
(IRREGULAR XYLEM 1); cellulose synthase/ transferase,
transferring glycosyl groups | chr4:10312846-10316719
REVERSE
Length = 985
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 39 CQICGDNVGVTASGDTFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRY 88
C CG+ +GV ++G+ FVAC+EC+FP+C+ C EYE K+G + C +C Y
Sbjct: 9 CNTCGEEIGVKSNGEFFVACHECSFPICKACLEYEFKEGRRICLRCGNPY 58