Jatropha Genome Database

JcCB0362691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0362691.10 - phase: 1 /TE/partial
         (648 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21000.1 | Symbols:  | unknown protein | chr3:7363921-7365138...    55   1e-07

>AT3G21000.1 | Symbols:  | unknown protein | chr3:7363921-7365138
           FORWARD
          Length = 405

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 9/146 (6%)

Query: 277 KSKVECYRCHRYGHYQSECRTNLNKDGGRQSXFAEKEEESEITLLMACQ-ASNQTEEDTK 335
           KS+  C  C++  H Q +C+  ++ D        ++E+E EI +    +   N   +   
Sbjct: 225 KSEKWCGLCYKNNHNQEDCKFRIHTD--------KEEKEDEIVVDYRLETVPNLGAKTYD 276

Query: 336 QNIWYLDTGCSNHMSGNKSAFSIFDETYRDSVKFGNNSRVSIMGKGQXXIQTRRNVTXKI 395
            +IW +      +M+     F+  D T++ +V   + + + + GKG   I+ +      I
Sbjct: 277 DDIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTI 336

Query: 396 SNVIYVPNLNINLPNIGQLQEKGYEI 421
            NVI+VP LN N+ + G++  K Y I
Sbjct: 337 RNVIFVPGLNRNVLSFGKMVSKRYSI 362