Jatropha Genome Database

JcCB0361141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0361141.10 + phase: 0 /partial
         (284 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57370.1 | Symbols:  | unknown protein | chr5:23244811-232454...   104   8e-23

>AT5G57370.1 | Symbols:  | unknown protein | chr5:23244811-23245470
           FORWARD
          Length = 219

 Score =  104 bits (259), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 48/55 (87%), Positives = 49/55 (89%)

Query: 230 MMKKFGIPIGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPPERNR 284
           MMK  GIP GFDSTKGKPV GADVSG+R VTKRQPRQYMNRRGGFNRPLP ERNR
Sbjct: 165 MMKMLGIPTGFDSTKGKPVAGADVSGIRAVTKRQPRQYMNRRGGFNRPLPAERNR 219