Jatropha Genome Database

JcCB0360521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0360521.10 - phase: 0 /partial
         (380 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47980.1 | Symbols: SCC3, ATSCC3 | SCC3 (SISTER-CHROMATID COH...   566   e-162

>AT2G47980.1 | Symbols: SCC3, ATSCC3 | SCC3 (SISTER-CHROMATID
           COHESION PROTEIN 3); binding | chr2:19631423-19636795
           FORWARD
          Length = 1098

 Score =  566 bits (1460), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/365 (74%), Positives = 303/365 (83%)

Query: 5   QACGAKFHIKXXXXXXXXXXXXXXXXXXXARKGEVEDYQSTKRKEFKNFKENLVSFWDIL 64
           QACGAK+ IK                   AR GE+EDYQS+++KE KNFKENLVSFW+ L
Sbjct: 108 QACGAKYSIKDDLLDETDVDDVVVSLVNLARAGELEDYQSSRKKELKNFKENLVSFWNNL 167

Query: 65  VVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQIASLMGLQLVKSFISVAKTLGAQRE 124
           ++ECQNGPLFD+VLFDKCMDYIIALSCTPPRVYRQ A+LMGLQLV SFISVA TLG+QRE
Sbjct: 168 IIECQNGPLFDRVLFDKCMDYIIALSCTPPRVYRQTATLMGLQLVTSFISVANTLGSQRE 227

Query: 125 TTQRQLNAEKKKRTEGPRLESLNKRLSVTHEKIVVLEDMMRKIFTGLFVHRYRDIDPNIR 184
           TTQRQLNAE KKR +GPR++SLNKRLSVTHE+I  LEDMMRKIFTGLFVHRYRDID +IR
Sbjct: 228 TTQRQLNAESKKRADGPRVDSLNKRLSVTHEQITTLEDMMRKIFTGLFVHRYRDIDNDIR 287

Query: 185 MSCIESLGVWILSYPSLFLQDLYLKYLGWTLNDKSAGVRKASILALQNLYDMDDNVPTLG 244
           MSCI+SLG+WILSYPSLFLQDLYLKYLGWTLNDK+AGVRKAS+LALQ LY+MD+NVPTLG
Sbjct: 288 MSCIQSLGIWILSYPSLFLQDLYLKYLGWTLNDKNAGVRKASLLALQKLYEMDENVPTLG 347

Query: 245 LFTERFSNRMIELADDIDVSVAVSAIGLVKQLLRHQXXXXXXXXXXXXXXXXXXADIRRA 304
           LFT+RFSNRMIE+ADD+D+S AV AIGLVKQLLRHQ                   +IRRA
Sbjct: 348 LFTQRFSNRMIEMADDVDMSAAVCAIGLVKQLLRHQLIPDDDLGPLYDLLIDQPQEIRRA 407

Query: 305 IGELVYDHLIAQKFNGSQSGTRGNDNGSSVVHLSRMLQILREFSTDPILSIYVIDDVWEY 364
           IGELVYDHLIAQKFN S S   G+D+ SS +H+ RMLQILREFSTDPIL +YVIDDVWEY
Sbjct: 408 IGELVYDHLIAQKFNSSPSSLTGHDDSSSEIHIFRMLQILREFSTDPILCVYVIDDVWEY 467

Query: 365 MKAMK 369
           MKAMK
Sbjct: 468 MKAMK 472