Jatropha Genome Database

JcCB0359851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0359851.10 + phase: 0 /partial
         (460 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03100.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   568   e-162
AT4G17616.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   138   7e-33
AT1G69290.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    61   2e-09
AT1G68980.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    59   5e-09

>AT1G03100.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:744026-746407 REVERSE
          Length = 793

 Score =  568 bits (1465), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 273/432 (63%), Positives = 345/432 (79%), Gaps = 14/432 (3%)

Query: 40  SLSTTAGTILVQARDLAKLSTEIENAIDNHGYNDAWNLFEQHMQIEGFPRKTIVNKVLAS 99
           ++S+ +G+IL+QARD AKL+ EI+ A+D H  ++AW LFEQHMQ+EGFPRK++VN V+  
Sbjct: 80  AISSISGSILLQARDPAKLNEEIQIAVDEHRCDEAWRLFEQHMQMEGFPRKSVVNNVVVC 139

Query: 100 FAESMDIRWLEKAYGLVEQAIGESKQNLLEKEALIYLSYGLAKCGLVVPASTIIRKLIEM 159
           FAES+D  WL+K Y LVEQA  E KQNLLEKE L+YLS  LAK G+ VPASTI+RKL+E 
Sbjct: 140 FAESLDSNWLQKGYSLVEQAYEEGKQNLLEKEPLLYLSLALAKSGMAVPASTILRKLVET 199

Query: 160 EQYPPVTAWSAILAHMSLTAPGAYLASELILEIGYLFQDGRVDPRKKSNAPLIAMRPNTT 219
           E+YP V+AWSA+LAHMSL   G+YL++EL+LEIGYLF + RVDPRKKSNAPL+AM+PNT 
Sbjct: 200 EEYPHVSAWSAVLAHMSLAGSGSYLSAELVLEIGYLFHNNRVDPRKKSNAPLLAMKPNTQ 259

Query: 220 SMNIALAGCLLFGTTKKAEQLLDMMPRIFIKVNAALLITMANIYERNGRREELKKLQRHV 279
            +N+ALAGCLLFGTT+KAEQLLDM+P+I +K +A LL+ MA+IYERNGRREEL+KLQRH+
Sbjct: 260 VLNVALAGCLLFGTTRKAEQLLDMIPKIGVKADANLLVIMAHIYERNGRREELRKLQRHI 319

Query: 280 DEAQGLSDIQFRQFYNCLLTCHLKFGDLDSASSMVLKMLRKAKEVRNSLAIATLGIQS-- 337
           DEA  L++ QF QFYNCLL CHLKFGDL+SAS MVL+MLR+ K  RNSL  A L   +  
Sbjct: 320 DEACNLNESQFWQFYNCLLMCHLKFGDLESASKMVLEMLRRGKVARNSLGAAILEFDTAD 379

Query: 338 DRKSYSSLNHGEPDSLKQNKSIGNP---------MISYDEFLKDQKFLKLDAEAKELLNS 388
           D + Y+    G+   +K++    NP         MI YDEF +D+KFLKL+AEAK++L +
Sbjct: 380 DGRLYTKRVSGKGSEVKEHD---NPETRVVSIHSMIPYDEFSRDRKFLKLEAEAKDVLGA 436

Query: 389 LLSKLQAQVVLITTDRGVLQPTDKIYVKLVKAFLEAGKTKELASFLNQAEKEDSPASNDD 448
           LL+KL  QV LIT++RGVLQPT++IYVKL KAFLE+GK KELA FL +AE EDSP S+D+
Sbjct: 437 LLAKLHVQVELITSERGVLQPTEEIYVKLAKAFLESGKMKELAKFLLKAEHEDSPVSSDN 496

Query: 449 SILVNVINSCIS 460
           S+L+NVIN+CIS
Sbjct: 497 SMLINVINACIS 508


>AT4G17616.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           Pentatricopeptide repeat (InterPro:IPR002885); BEST
           Arabidopsis thaliana protein match is: pentatricopeptide
           (PPR) repeat-containing protein (TAIR:AT1G03100.1); Has
           497 Blast hits to 452 proteins in 24 species: Archae -
           0; Bacteria - 2; Metazoa - 6; Fungi - 0; Plants - 485;
           Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
           | chr4:9819608-9821632 FORWARD
          Length = 674

 Score =  138 bits (348), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 161/315 (51%), Gaps = 21/315 (6%)

Query: 58  LSTEIENAIDNHGYNDAWNLFEQHMQIEGFPRKTIVNKVLASFAESMDIRWLEKAYGLVE 117
           L  ++E A+ +H  +DAW++F+   ++ GFP   I+N+ +   + S D  WL KA  L  
Sbjct: 57  LKKKLETALKDHRVDDAWDVFKDFKRLYGFPESVIMNRFVTVLSYSSDAGWLCKASDLTR 116

Query: 118 QAIGESKQN--LLEKEALIYLSYGLAKCGLVVPASTIIRKLIEMEQYPPVTAWSAILAHM 175
            A+   KQN  +L  + L  LS  LA+  +V  A +I+R ++E            ++ HM
Sbjct: 117 LAL---KQNPGMLSGDVLTKLSLSLARAQMVESACSILRIMLEKGYVLTSDVLRLVVMHM 173

Query: 176 SLTAPGAYLASELILEIGYLFQDGRVDPRKKSNAPLIAMRPNTTSMNIALAGCLLFGTTK 235
             T  G  LAS  ++++   F +  V   K++++P   ++P+T   N+ L  C+ FG + 
Sbjct: 174 VKTEIGTCLASNYLVQVCDRFVEFNVG--KRNSSPGNVVKPDTVLFNLVLGSCVRFGFSL 231

Query: 236 KAEQLLDMMPRIFIKVNAALLITMANIYERNGRREELKKLQRHVDEAQGLSDIQFRQFYN 295
           K ++L+++M ++ +  +A  ++ M+ IYE NG R+EL+K + H+ +        ++ F++
Sbjct: 232 KGQELIELMAKVDVVADAYSIVIMSCIYEMNGMRDELRKFKEHIGQVPPQLLGHYQHFFD 291

Query: 296 CLLTCHLKFGDLDSASSMVLKMLRKAKEVRNSLAIATLGIQSDRKSYSSLN--------- 346
            LL+   KF D+ SA  + L M +    V    ++  LG  S++     +          
Sbjct: 292 NLLSLEFKFDDIGSAGRLALDMCKSKVLV----SVENLGFDSEKPRVLPVGSHHIRSGLK 347

Query: 347 -HGEPDSLKQNKSIG 360
            H  P  L+++ S+G
Sbjct: 348 IHISPKLLQRDSSLG 362


>AT1G69290.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:26047372-26049348 REVERSE
          Length = 658

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 127/284 (44%), Gaps = 23/284 (8%)

Query: 56  AKLSTEIENAIDNHGYNDAWNLFEQHMQIEGFPRKTIVNKVLASFA------ESMDIRWL 109
           +   + + ++++ H  ++AW  F         P K ++N ++   +      ES+  R L
Sbjct: 59  SSFESTLHDSLNAHYTDEAWKAFRSLTAASSLPEKRLINSLITHLSGVEGSGESISHR-L 117

Query: 110 EKAYGLVEQAIGESKQNLLEKEALIYLSYGLAKCGLVVPASTIIRKLIEMEQYPPVTAWS 169
           ++A+      I E    LLE E +  L   +       PA  +++ + +   + P   W 
Sbjct: 118 KRAFASAAYVI-EKDPILLEFETVRTLLESMKLAKAAGPALALVKCMFKNRYFVPFDLWG 176

Query: 170 AILAHMSLTAPGAYLASELILEIGYLFQDGRVDPRKKSNAPLIAMRPNTTSMNIAL-AGC 228
            ++  + +      LA  L      +F++     R   +  L  M+P+  + N AL A C
Sbjct: 177 HLV--IDICRENGSLAPFL-----KVFKES---CRISVDEKLEFMKPDLVASNAALEACC 226

Query: 229 LLFGTTKKAEQLLDMMPRIFIKVNAALLITMANIYERNGRREELKKLQRHVDEAQGLSDI 288
               +   AE +++ M  + +K +      +A +Y R G RE++ +L+  +D   G    
Sbjct: 227 RQMESLADAENVIESMAVLGVKPDELSFGFLAYLYARKGLREKISELENLMD---GFGFA 283

Query: 289 QFRQFYNCLLTCHLKFGDLDSASSMVLKMLRKAKEVRNSLAIAT 332
             R  Y+ +++ ++K GDLDS S ++L  L++  E  +S ++ T
Sbjct: 284 SRRILYSNMISGYVKSGDLDSVSDVILHSLKEGGE-ESSFSVET 326


>AT1G68980.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:25933023-25934882 FORWARD
          Length = 619

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 121/277 (43%), Gaps = 24/277 (8%)

Query: 56  AKLSTEIENAIDNHGYNDAWNLFEQHMQIEGFPRKTIVNKV---LASFA---ESMDIRWL 109
           +   + + +++  H  + AW +F         P K ++N +   L+SF    ++  +R  
Sbjct: 29  SSFESTLHHSLITHDTDQAWKVFRSFAAASSLPDKRLLNSLITHLSSFHNTDQNTSLRHR 88

Query: 110 EKAYGLVEQAIGESKQNLLEKEAL--IYLSYGLAKCGLVVPASTIIRKLIEMEQYPPVTA 167
            K   +    + E    LLE E +  +  S  LAK     PA  ++  + +   + P   
Sbjct: 89  LKRAFVSTTYVIEKDPILLEFETVRTVLESMKLAKAS--GPALALVECMFKNRYFVPFDL 146

Query: 168 WSAILAHMSLTAPGAYLASELILEIGYLFQDGRVDPRKKSNAPLIAMRPNTTSMNIAL-A 226
           W  +L  + +      LA+          +  R   R   +  L  M+P+  + N AL A
Sbjct: 147 WGDLL--IDVCRENGSLAA--------FLKVFRESCRIAVDEKLDFMKPDLVASNAALEA 196

Query: 227 GCLLFGTTKKAEQLLDMMPRIFIKVNAALLITMANIYERNGRREELKKLQRHVDEAQGLS 286
            C    +   AE L++ M  + +K +      +A +Y R G RE++ +L+  +D   GL 
Sbjct: 197 CCRQMESLADAENLIESMDVLGVKPDELSFGFLAYLYARKGLREKISELEDLMD---GLG 253

Query: 287 DIQFRQFYNCLLTCHLKFGDLDSASSMVLKMLRKAKE 323
               R  Y+ +++ ++K GDLDSAS ++L  L+   E
Sbjct: 254 FASRRILYSSMISGYVKSGDLDSASDVILCSLKGVGE 290