Jatropha Genome Database

JcCB0357671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0357671.10 + phase: 0 /pseudo/partial
         (244 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20020.1 | Symbols: CAF1, ATCAF1 | CAF1; RNA splicing factor,...   343   6e-95
AT1G23400.1 | Symbols: CAF2, ATCAF2 | CAF2; RNA splicing factor,...   272   1e-73
AT4G31010.1 | Symbols:  | RNA binding | chr4:15106708-15108446 F...   199   2e-51
AT5G54890.1 | Symbols:  | RNA binding | chr5:22293346-22294909 F...   198   2e-51
AT4G31010.2 | Symbols:  | RNA binding | chr4:15106708-15108038 F...   161   4e-40
AT3G01370.1 | Symbols: ATCFM2, CFM2 | ATCFM2 (CRM FAMILY MEMBER ...    61   8e-10
AT3G18390.1 | Symbols: EMB1865 | EMB1865 (embryo defective 1865)...    50   1e-06
AT3G23070.1 | Symbols:  | RNA binding | chr3:8203548-8207243 FOR...    49   2e-06
AT4G14510.1 | Symbols:  | RNA binding | chr4:8337390-8341057 REV...    48   7e-06

>AT2G20020.1 | Symbols: CAF1, ATCAF1 | CAF1; RNA splicing factor,
           transesterification mechanism | chr2:8644464-8647090
           FORWARD
          Length = 701

 Score =  343 bits (880), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 158/215 (73%), Positives = 186/215 (86%)

Query: 1   PPDKKGVKPVQSPGPFLPGSGPRYVYTREEIQGEPLTRDEVKDLIKGCLKTKRQLNMGRD 60
           P  KKG+KPVQ PGPF PG GPRYVY++EEI GEPLT++EV++L+  CLKT RQLNMGRD
Sbjct: 208 PVGKKGLKPVQKPGPFRPGVGPRYVYSKEEILGEPLTKEEVRELVTSCLKTTRQLNMGRD 267

Query: 61  GLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCQQLEEKTGGKVIHRKAGLVYLFRG 120
           GLTHNML+NIH  WKRRRVCKIKCKGVCTVDMDNVC+QLEEK GGKVI+R+ G+++LFRG
Sbjct: 268 GLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFRG 327

Query: 121 RNYNYRTRPRFPLMLWKPVTPVYPRLIQRAPEGLTVEEAAEMRKKGRDLIPIRKLARNGV 180
           RNYN+RTRPRFPLMLWKPV PVYPRLIQ+ PEGLT +EA  MR+KGR+L+PI KL +NGV
Sbjct: 328 RNYNHRTRPRFPLMLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGV 387

Query: 181 FYNLAHEVRLAFQVCELVRINCQAIVRSDCRKIGA 215
           + +L   V+ AF+VCELVRI+CQ +  SD RKIGA
Sbjct: 388 YCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGA 422


>AT1G23400.1 | Symbols: CAF2, ATCAF2 | CAF2; RNA splicing factor,
           transesterification mechanism | chr1:8312199-8314740
           REVERSE
          Length = 564

 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/215 (60%), Positives = 162/215 (75%)

Query: 1   PPDKKGVKPVQSPGPFLPGSGPRYVYTREEIQGEPLTRDEVKDLIKGCLKTKRQLNMGRD 60
           P  K GVK V+ PGP   G  P+    REE+ GEPL R E   LIK  +   RQ+N+GRD
Sbjct: 168 PAGKSGVKYVEMPGPLPFGRYPKEGMNREEVLGEPLKRWEKGMLIKPHMHDNRQVNLGRD 227

Query: 61  GLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCQQLEEKTGGKVIHRKAGLVYLFRG 120
           G THNML+ IH+HWKRRRVCK++CKGV TVDM+NVC+ LEEKTGG++IHR  G+VYLFRG
Sbjct: 228 GFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRG 287

Query: 121 RNYNYRTRPRFPLMLWKPVTPVYPRLIQRAPEGLTVEEAAEMRKKGRDLIPIRKLARNGV 180
           RNYNYRTRP++PLMLWKP  PVYP+LIQ  PEGLT EEA E R KG+ L PI KL++NGV
Sbjct: 288 RNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGV 347

Query: 181 FYNLAHEVRLAFQVCELVRINCQAIVRSDCRKIGA 215
           + +L  +VR AF++  LV+++C  +  SD +KIGA
Sbjct: 348 YVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGA 382


>AT4G31010.1 | Symbols:  | RNA binding | chr4:15106708-15108446
           FORWARD
          Length = 405

 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 134/190 (70%), Gaps = 2/190 (1%)

Query: 28  REEIQGEPLTRDEVKDLIKGCL--KTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCK 85
           RE+IQG  LT  E K L++ C   KTKRQ+N+GRDGLTHNML++++ HWK     ++KC 
Sbjct: 151 REKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCL 210

Query: 86  GVCTVDMDNVCQQLEEKTGGKVIHRKAGLVYLFRGRNYNYRTRPRFPLMLWKPVTPVYPR 145
           GV T+DM NV   LE+KT G+V+ + +G + L+RGRNY+ + RP+ PLMLWKP  PVYPR
Sbjct: 211 GVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPR 270

Query: 146 LIQRAPEGLTVEEAAEMRKKGRDLIPIRKLARNGVFYNLAHEVRLAFQVCELVRINCQAI 205
           LI+   +GL+++E   MRKKG  +  + KLA+NG + +L   VR AF V ELVRI+C  +
Sbjct: 271 LIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGL 330

Query: 206 VRSDCRKIGA 215
            R D +KIGA
Sbjct: 331 ERKDYKKIGA 340


>AT5G54890.1 | Symbols:  | RNA binding | chr5:22293346-22294909
           FORWARD
          Length = 358

 Score =  198 bits (504), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 133/195 (68%), Gaps = 2/195 (1%)

Query: 23  RYVYTREEIQGEPLTRDEVKDLIKGCLKTK--RQLNMGRDGLTHNMLDNIHAHWKRRRVC 80
           ++V  R  + GE LT DEV +LI+    +   RQ+N+G+ G+THNM+D+IH HWK+    
Sbjct: 130 QWVEERARVLGETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNHWKKAEAV 189

Query: 81  KIKCKGVCTVDMDNVCQQLEEKTGGKVIHRKAGLVYLFRGRNYNYRTRPRFPLMLWKPVT 140
           +IKC GV T+DMDN+C  LEEK+GGK+++R   ++ L+RGRNY+ ++RP  PLMLWKP  
Sbjct: 190 RIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNYDPKSRPIIPLMLWKPHP 249

Query: 141 PVYPRLIQRAPEGLTVEEAAEMRKKGRDLIPIRKLARNGVFYNLAHEVRLAFQVCELVRI 200
           P+YPRL++   +GL  EE  EMR +G     + KL RNGV+ N+   VR  F+  E+VR+
Sbjct: 250 PIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFETEEIVRL 309

Query: 201 NCQAIVRSDCRKIGA 215
           +C  +  SDC++IG 
Sbjct: 310 DCTHVGMSDCKRIGV 324


>AT4G31010.2 | Symbols:  | RNA binding | chr4:15106708-15108038
           FORWARD
          Length = 341

 Score =  161 bits (407), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/151 (51%), Positives = 107/151 (70%), Gaps = 2/151 (1%)

Query: 28  REEIQGEPLTRDEVKDLIKGCL--KTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCK 85
           RE+IQG  LT  E K L++ C   KTKRQ+N+GRDGLTHNML++++ HWK     ++KC 
Sbjct: 151 REKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCL 210

Query: 86  GVCTVDMDNVCQQLEEKTGGKVIHRKAGLVYLFRGRNYNYRTRPRFPLMLWKPVTPVYPR 145
           GV T+DM NV   LE+KT G+V+ + +G + L+RGRNY+ + RP+ PLMLWKP  PVYPR
Sbjct: 211 GVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPR 270

Query: 146 LIQRAPEGLTVEEAAEMRKKGRDLIPIRKLA 176
           LI+   +GL+++E   MRKKG  +  + KL 
Sbjct: 271 LIKTTIDGLSIDETKAMRKKGLAVPALTKLG 301


>AT3G01370.1 | Symbols: ATCFM2, CFM2 | ATCFM2 (CRM FAMILY MEMBER 2);
           RNA binding | chr3:139033-143477 FORWARD
          Length = 1011

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 48/86 (55%)

Query: 40  EVKDLIKGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCQQL 99
           E++ L    ++  ++L +G+ G+T  +++ IH  W+   V KI C+ +  ++M      L
Sbjct: 170 ELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVL 229

Query: 100 EEKTGGKVIHRKAGLVYLFRGRNYNY 125
           E KTGG VI R    + L+RG NY Y
Sbjct: 230 ETKTGGLVIWRSGSKILLYRGVNYQY 255



 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 30  EIQGEPLTRDEVKDLIKGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCT 89
           +I  E +T DE   L K  LK K  L +GR G+    ++N+H HWK R + KI C     
Sbjct: 573 DIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSI 632

Query: 90  VDMDNVCQQLEEKTGGKVIH----RKAGLVYLFRGRNYNYRTRPR 130
                V + LE ++GG ++      K   + ++RG+NY    RP+
Sbjct: 633 EAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYE---RPQ 674


>AT3G18390.1 | Symbols: EMB1865 | EMB1865 (embryo defective 1865);
           RNA binding | chr3:6313572-6317584 FORWARD
          Length = 848

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 48/85 (56%)

Query: 39  DEVKDLIKGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCQQ 98
            E++ L +  +  + ++N+ + GLT  +++ I+  W++  + ++K   V   DM    + 
Sbjct: 246 SELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEI 305

Query: 99  LEEKTGGKVIHRKAGLVYLFRGRNY 123
           +E +TGG VI R   ++ ++RG +Y
Sbjct: 306 VERRTGGMVIWRAGSVMVVYRGLDY 330


>AT3G23070.1 | Symbols:  | RNA binding | chr3:8203548-8207243
           FORWARD
          Length = 881

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 46/88 (52%)

Query: 36  LTRDEVKDLIKGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNV 95
           L   E++ L     +T  ++ +   G+T   +D I   WK   + ++K +G   ++M  +
Sbjct: 221 LPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKM 280

Query: 96  CQQLEEKTGGKVIHRKAGLVYLFRGRNY 123
            + LE+KTGG VI R    + L+RG +Y
Sbjct: 281 HEILEKKTGGLVIWRSGTSISLYRGVSY 308


>AT4G14510.1 | Symbols:  | RNA binding | chr4:8337390-8341057
           REVERSE
          Length = 932

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 28  REEIQGEPLTRDEVKDLIKGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGV 87
           R +++G  +T +E     K  LK K  L +GR G+    ++N+H HWK R + KI  K  
Sbjct: 684 RTDLEG--ITEEERFMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAK 741

Query: 88  CTVDMDNVCQQLEEKTGGKVIH----RKAGLVYLFRGRNYNYRT--RPR 130
                  V   LE ++GG ++      K   V ++RG++Y   T  RP+
Sbjct: 742 TLEGAQKVAMALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPK 790