Jatropha Genome Database
- JcCB0353461.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0353461.10 - phase: 2 /partial
(279 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G24930.1 | Symbols: ATCOL4, COL4 | zinc finger (B-box type) f... 339 9e-94
AT5G57660.1 | Symbols: ATCOL5, COL5 | zinc finger (B-box type) f... 212 2e-55
AT2G24790.1 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3); pr... 200 6e-52
AT3G02380.1 | Symbols: COL2 | COL2 (constans-like 2); transcript... 165 2e-41
AT5G15850.1 | Symbols: COL1, ATCOL1 | COL1 (constans-like 1); tr... 160 1e-39
AT5G15840.1 | Symbols: CO, FG | CO (CONSTANS); transcription fac... 149 1e-36
AT2G24790.2 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3); pr... 116 1e-26
AT5G15840.2 | Symbols: CO, FG | CO (CONSTANS); transcription fac... 69 2e-12
AT1G73870.1 | Symbols: | zinc finger (B-box type) family protei... 68 7e-12
AT1G25440.1 | Symbols: | zinc finger (B-box type) family protei... 65 3e-11
AT1G49130.1 | Symbols: | zinc finger (B-box type) family protei... 65 6e-11
AT1G49130.2 | Symbols: | zinc finger (B-box type) family protei... 65 6e-11
AT5G14370.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 64 1e-10
AT2G33500.2 | Symbols: | zinc finger (B-box type) family protei... 64 1e-10
AT2G33500.1 | Symbols: | zinc finger (B-box type) family protei... 64 1e-10
AT1G68520.1 | Symbols: | zinc finger (B-box type) family protei... 64 1e-10
AT1G04500.1 | Symbols: | zinc finger CONSTANS-related | chr1:12... 62 3e-10
AT4G25990.1 | Symbols: CIL | CIL | chr4:13191937-13193543 REVERSE 62 4e-10
AT2G47890.1 | Symbols: | zinc finger (B-box type) family protei... 62 5e-10
AT2G33350.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 62 6e-10
AT5G57180.2 | Symbols: CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS... 62 6e-10
AT2G33350.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 62 6e-10
AT5G41380.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 61 8e-10
AT3G07650.4 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 60 1e-09
AT3G07650.3 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 60 1e-09
AT3G07650.2 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 60 1e-09
AT3G07650.1 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 60 1e-09
AT1G07050.1 | Symbols: | CONSTANS-like protein-related | chr1:2... 59 4e-09
AT1G63820.1 | Symbols: | INVOLVED IN: biological_process unknow... 59 4e-09
AT3G21880.1 | Symbols: | zinc finger (B-box type) family protei... 57 1e-08
AT1G28050.1 | Symbols: | zinc finger (B-box type) family protei... 57 1e-08
AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSE... 57 1e-08
AT5G02810.1 | Symbols: PRR7, APRR7 | PRR7 (PSEUDO-RESPONSE REGUL... 57 2e-08
AT5G48250.1 | Symbols: | zinc finger (B-box type) family protei... 56 2e-08
AT2G46790.2 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSE... 56 2e-08
AT5G60100.1 | Symbols: APRR3, PRR3 | APRR3 (ARABIDOPSIS PSEUDO-R... 56 3e-08
AT5G24470.1 | Symbols: APRR5, PRR5 | APRR5 (ARABIDOPSIS PSEUDO-R... 56 3e-08
AT3G12890.1 | Symbols: ASML2 | ASML2 (ACTIVATOR OF SPOMIN::LUC2)... 55 5e-08
AT2G46670.1 | Symbols: | pseudo-response regulator, putative / ... 55 6e-08
AT4G27900.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 55 6e-08
AT4G27900.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 55 6e-08
AT5G61380.1 | Symbols: TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB E... 54 1e-07
AT5G53420.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 53 2e-07
AT5G53420.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 52 3e-07
AT4G25990.2 | Symbols: CIL | CIL | chr4:13191937-13193543 REVERSE 52 3e-07
AT5G57180.1 | Symbols: CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS... 52 5e-07
AT3G21175.1 | Symbols: ZML1, TIFY2B | ZML1 (ZIM-LIKE 1); sequenc... 51 9e-07
AT3G21175.2 | Symbols: ZML1 | ZML1 (ZIM-LIKE 1); sequence-specif... 50 1e-06
AT3G21175.3 | Symbols: ZML1 | ZML1 (ZIM-LIKE 1); transcription f... 50 2e-06
AT5G59990.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 48 5e-06
>AT5G24930.1 | Symbols: ATCOL4, COL4 | zinc finger (B-box type)
family protein | chr5:8589325-8590949 FORWARD
Length = 406
Score = 339 bits (870), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 182/304 (59%), Positives = 216/304 (71%), Gaps = 27/304 (8%)
Query: 1 CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSASGVKPNAINFLDDRHFSDV 60
CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSS VK A+NFLDD +FSD+
Sbjct: 105 CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDI 164
Query: 61 DGDADVSREEAEAASWLLPNPPNPKVM------------------ESPDLNTG-QYVFSE 101
DG+ EE EAASWLL PNPK +SP++NTG QY+FS+
Sbjct: 165 DGNGSREEEEEEAASWLL--LPNPKTTTTATAGIVAVTSAEEVPGDSPEMNTGQQYLFSD 222
Query: 102 MEPYLDLDYGPVDPKLESQEQNSSGTDGVVPVQSKSVQTPLVNDHCFELDFS-GSKAFAY 160
+PYLDLDYG VDPK+ES EQNSSGTDGVVPV++++V+ P VN++CFE+DF+ GSK F Y
Sbjct: 223 PDPYLDLDYGNVDPKVESLEQNSSGTDGVVPVENRTVRIPTVNENCFEMDFTGGSKGFTY 282
Query: 161 GYKAQCLXXXXXXXXXXXXXXPDGGNMVDISNPYSRSVSNGIESANQ-TVQLSAVDREAR 219
G C+ PDGG++ D+S PY ++G + Q V L++ +REAR
Sbjct: 283 GGGYNCISHSVSSSSMEVGVVPDGGSVADVSYPYGGPATSGADPGTQRAVPLTSAEREAR 342
Query: 220 VLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTEVE---VDRSSIY-GFGV 275
V+RYREKRKNRKFEKTIRYASRKAYAE RPRIKGRFAKRTDT V I+ GFG+
Sbjct: 343 VMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESNDVVGHGGIFSGFGL 402
Query: 276 VPSF 279
VP+F
Sbjct: 403 VPTF 406
>AT5G57660.1 | Symbols: ATCOL5, COL5 | zinc finger (B-box type)
family protein | chr5:23355573-23356729 FORWARD
Length = 355
Score = 212 bits (539), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/292 (45%), Positives = 173/292 (59%), Gaps = 22/292 (7%)
Query: 1 CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSASGVKPNAINFLDDRHFSDV 60
CKADAAALCV+CD DIHSANPLA RHERVPV F+DS +A + F + V
Sbjct: 73 CKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISASSTFGILGSSTTV 132
Query: 61 DGDA-DVSREEAEAASWLLPNPPN-PKVMESPDLN---TGQYVFSEMEPYLDLDYGPVDP 115
D A V ++ WLLPN N P +E N + ++FS+ + +D ++ P
Sbjct: 133 DLTAVPVMADDLGLCPWLLPNDFNEPAKIEIGTENMKGSSDFMFSDFDRLIDFEF----P 188
Query: 116 KLESQEQNSSGTDGVVPVQSKSVQTPLVN-DHCFELDFSGSKAFAYGYKAQCLXXXXXXX 174
+ QN++G D +VPVQ+K+ PL N DHCF++DF SK A+ Y +Q +
Sbjct: 189 NSFNHHQNNAGGDSLVPVQTKTEPLPLTNNDHCFDIDFCRSKLSAFTYPSQSVSHSVSTS 248
Query: 175 XXXXXXXPDGGNMVDISNPYSRSVSNGIESANQTVQLSAVDREARVLRYREKRKNRKFEK 234
PDG ++ S + G + Q S++DREARVLRYREKRKNRKFEK
Sbjct: 249 SIEYGVVPDGNTNNSVNRSTITSSTTGGDH-----QASSMDREARVLRYREKRKNRKFEK 303
Query: 235 TIRYASRKAYAETRPRIKGRFAKRTDTEV-EVDRSSIYG------FGVVPSF 279
TIRYASRKAYAE+RPRIKGRFAKRT+TE ++ S +Y +GVVP+F
Sbjct: 304 TIRYASRKAYAESRPRIKGRFAKRTETENDDIFLSHVYASAAHAQYGVVPTF 355
>AT2G24790.1 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3);
protein binding / transcription factor/ zinc ion binding
| chr2:10566959-10567946 FORWARD
Length = 294
Score = 200 bits (509), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 129/263 (49%), Positives = 157/263 (59%), Gaps = 53/263 (20%)
Query: 1 CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSASGVKPNAINFLDDRHFSDV 60
CKADAAALCVTCDRDIHSANPL+RRHERVP+TPFYD+V A +++NF+D+
Sbjct: 63 CKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSAS-SSVNFVDE------ 115
Query: 61 DGDADVSREEAEAASWLLPNPPNPKVMESPDLNTGQYVFSEMEPYLDLDYGPVDPKLE-S 119
DG DV+ ASWLL + +E +L + DLDY PK+E +
Sbjct: 116 DG-GDVT------ASWLLAK----EGIEITNL------------FSDLDY----PKIEVT 148
Query: 120 QEQNSSGTDGVVPVQSKSVQTPLVNDHCFELDFSGSKAFAYGYKAQCLXXXXXXXXXXXX 179
E+NSSG DGVVPVQ+K +N+ F D S SK G+ +
Sbjct: 149 SEENSSGNDGVVPVQNK----LFLNEDYFNFDLSASKISQQGFNF--INQTVSTRTIDVP 202
Query: 180 XXPD-GGNMVDISNPYSRSVSNGIESANQTVQLSAVDREARVLRYREKRKNRKFEKTIRY 238
P+ GG +++N + VQLS +REARVLRYREKRKNRKFEKTIRY
Sbjct: 203 LVPESGGVTAEMTN-----------TETPAVQLSPAEREARVLRYREKRKNRKFEKTIRY 251
Query: 239 ASRKAYAETRPRIKGRFAKRTDT 261
ASRKAYAE RPRIKGRFAKRTD+
Sbjct: 252 ASRKAYAEMRPRIKGRFAKRTDS 274
>AT3G02380.1 | Symbols: COL2 | COL2 (constans-like 2); transcription
factor/ zinc ion binding | chr3:487438-488624 REVERSE
Length = 347
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 159/300 (53%), Gaps = 44/300 (14%)
Query: 1 CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSASGVKPNAINFLDDRHFSDV 60
CKADAA+LC CD +IHSANPLARRH+RVP+ P S +S S + P+
Sbjct: 71 CKADAASLCTACDAEIHSANPLARRHQRVPILPL--SANSCSSMAPS------------- 115
Query: 61 DGDADVSREEAEAASWLLPNPPNPKVMESPDLNTGQYVFSEMEPYLDL-DYGP-VDPKLE 118
+ DAD ++ E ASWLLPNP + N G ++F YLDL DY +D + E
Sbjct: 116 ETDADNDEDDREVASWLLPNPGK----NIGNQNNG-FLFGV--EYLDLVDYSSSMDNQFE 168
Query: 119 SQE----QNSSGTDGVVPVQSKSVQTPLV-NDHCFELDFS---GSKAFAYGYKAQCLXXX 170
+ Q S G DGVVP+Q + + L + F+L + S A + L
Sbjct: 169 DNQYTHYQRSFGGDGVVPLQVEESTSHLQQSQQNFQLGINYGFSSGAHYNNNSLKDLNHS 228
Query: 171 XXXXXXXXXXXPDGGNMVDISNPYSRSVSNGIESAN----QTVQ-LSAVDREARVLRYRE 225
P+ DI+ + R+ I+ + Q VQ L+ ++REARVLRYRE
Sbjct: 229 ASVSSMDISVVPES-TASDITVQHPRTTKETIDQLSGPPTQVVQQLTPMEREARVLRYRE 287
Query: 226 KRKNRKFEKTIRYASRKAYAETRPRIKGRFAKR------TDTEVEVDRSSIYGFGVVPSF 279
K+K RKF+KTIRYASRKAYAE RPRIKGRFAKR + S G+G+VPSF
Sbjct: 288 KKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFSTSLMSETGYGIVPSF 347
>AT5G15850.1 | Symbols: COL1, ATCOL1 | COL1 (constans-like 1);
transcription factor/ zinc ion binding |
chr5:5176297-5177473 REVERSE
Length = 355
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 150/297 (50%), Gaps = 26/297 (8%)
Query: 1 CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSASGVKPNAINFLDDRHFSDV 60
CKADAA+LC TCD +IHSANPLARRH+RVP+ P + S++ + + D V
Sbjct: 67 CKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLV 126
Query: 61 DGDADVSREEAEAASWLLPNPPNPKVMESPDLNTGQYVFSEMEPYLDL-DYGPVDPKLES 119
G + +EAEAASWLLP S + FS + +L+L DY D +
Sbjct: 127 LGQEEEDEDEAEAASWLLP--------NSGKNSGNNNGFSIGDEFLNLVDYSSSDKQFTD 178
Query: 120 QE----------QNSSGTDGVVPVQSKSVQTPLVNDHCFELDFSGSKAFAYGYKAQCLXX 169
Q Q S G DGVVP+Q + + F+L + A L
Sbjct: 179 QSNQYQLDCNVPQRSYGEDGVVPLQIEVSKGMYQEQQNFQLSINCGSWGALRSSNGSLSH 238
Query: 170 XXXXXXXXXXXXPDGGNM-VDISNPYSRSVSNGIESANQTVQLSAVDREARVLRYREKRK 228
P+ +SNP S LS DREARVLRYREK+K
Sbjct: 239 MVNVSSMDLGVVPESTTSDATVSNPRSPKAVTDQPPYPPAQMLSPRDREARVLRYREKKK 298
Query: 229 NRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTEVEVDR--SSIY----GFGVVPSF 279
RKFEKTIRYASRKAYAE RPRIKGRFAK+ D + E ++ S++ G+G+VPSF
Sbjct: 299 MRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAFSTMITFDTGYGIVPSF 355
>AT5G15840.1 | Symbols: CO, FG | CO (CONSTANS); transcription
factor/ transcription regulator/ zinc ion binding |
chr5:5171343-5172697 REVERSE
Length = 373
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 148/302 (49%), Gaps = 26/302 (8%)
Query: 1 CKADAAALCVTCDRDIHSANPLARRHERVPVTPFY-DSVSSASGVKPNAINFLDD---RH 56
C+AD A+LC CD ++HSANPLARRH+RVP+ P +S SS + + + D R
Sbjct: 75 CEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRL 134
Query: 57 FSDVDGDADVSREEAEAASWLLPNPPNPKVMESPDLNTGQYVFSEMEPYLDLDYGPVDPK 116
D + + ++ E ASWL PN ++ L + ++ +DY
Sbjct: 135 VVDQEEGEEGDKDAKEVASWLFPNSDKNNNNQNNGLLFSDEYLNLVDYNSSMDYKFTGEY 194
Query: 117 LESQE-----QNSSGTDGVVPVQ-SKSVQTPLVNDHCFELDFS-GSKAFAYGYKAQCLXX 169
+ Q+ Q S G D VVP++ +S N F+ + GS Y
Sbjct: 195 SQHQQNCSVPQTSYGGDRVVPLKLEESRGHQCHNQQNFQFNIKYGSSGTHYNDNGSINHN 254
Query: 170 XXXXXXXXXXXXPDGGNMVDISNPYS--RSVSNGIESANQTV---QLSAVDREARVLRYR 224
+ S+P + +V + A+Q + QLS +DREARVLRYR
Sbjct: 255 AYISSMETGVVPESTACVTTASHPRTPKGTVEQQPDPASQMITVTQLSPMDREARVLRYR 314
Query: 225 EKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTEVEVDRSSI-------YGFGVVP 277
EKRK RKFEKTIRYASRKAYAE RPR+ GRFAKR E+E + G+G+VP
Sbjct: 315 EKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR---EIEAEEQGFNTMLMYNTGYGIVP 371
Query: 278 SF 279
SF
Sbjct: 372 SF 373
>AT2G24790.2 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3);
protein binding / transcription factor/ zinc ion binding
| chr2:10566959-10567621 FORWARD
Length = 220
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 96/163 (58%), Gaps = 39/163 (23%)
Query: 1 CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSASGVKPNAINFLDDRHFSDV 60
CKADAAALCVTCDRDIHSANPL+RRHERVP+TPFYD+V A +++NF+D+
Sbjct: 63 CKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSAS-SSVNFVDE------ 115
Query: 61 DGDADVSREEAEAASWLLPNPPNPKVMESPDLNTGQYVFSEMEPYLDLDYGPVDPKLE-S 119
DG DV+ ASWLL +E +L + DLDY PK+E +
Sbjct: 116 DG-GDVT------ASWLLAKEG----IEITNL------------FSDLDY----PKIEVT 148
Query: 120 QEQNSSGTDGVVPVQSKSVQTPLVNDHCFELDFSGSKAFAYGY 162
E+NSSG DGVVPVQ+K +N+ F D S SK G+
Sbjct: 149 SEENSSGNDGVVPVQNK----LFLNEDYFNFDLSASKISQQGF 187
>AT5G15840.2 | Symbols: CO, FG | CO (CONSTANS); transcription
factor/ transcription regulator/ zinc ion binding |
chr5:5171873-5172697 REVERSE
Length = 274
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 9/143 (6%)
Query: 1 CKADAAALCVTCDRDIHSANPLARRHERVPVTPFY-DSVSSASGVKPNAINFLDD---RH 56
C+AD A+LC CD ++HSANPLARRH+RVP+ P +S SS + + + D R
Sbjct: 75 CEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRL 134
Query: 57 FSDVDGDADVSREEAEAASWLLPNPPNPKVMESPDLNTGQYVFSEMEPYLDLDYGPVDPK 116
D + + ++ E ASWL PN ++ L + ++ +DY
Sbjct: 135 VVDQEEGEEGDKDAKEVASWLFPNSDKNNNNQNNGLLFSDEYLNLVDYNSSMDYKFTGEY 194
Query: 117 LESQE-----QNSSGTDGVVPVQ 134
+ Q+ Q S G D VVP++
Sbjct: 195 SQHQQNCSVPQTSYGGDRVVPLK 217
>AT1G73870.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:27779214-27780522 FORWARD
Length = 392
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 35/45 (77%)
Query: 215 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 259
+REARVLRY+EKR+ R F K IRY RK AE RPRIKGRF KRT
Sbjct: 344 EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRT 388
>AT1G25440.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:8933939-8935284 REVERSE
Length = 417
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 188 VDISN-PYSRSVSNGIESANQTVQLSAV---------DREARVLRYREKRKNRKFEKTIR 237
+DIS P V NG ES +Q + REARV RYREKR+ R F K IR
Sbjct: 323 MDISGWPAFSMVENGGESTHQKQYVGGCLPSSGFGDGGREARVSRYREKRRTRLFSKKIR 382
Query: 238 YASRKAYAETRPRIKGRFAKR 258
Y RK AE RPR+KGRF KR
Sbjct: 383 YEVRKLNAEKRPRMKGRFVKR 403
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 23/29 (79%)
Query: 1 CKADAAALCVTCDRDIHSANPLARRHERV 29
C AD A LC +CD +HSANPLARRHERV
Sbjct: 29 CAADDAFLCQSCDSLVHSANPLARRHERV 57
>AT1G49130.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:18174741-18175936 REVERSE
Length = 326
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 36/45 (80%)
Query: 215 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 259
+REARV RYR+KRKNR FEK IRY RK A+ RPR+KGRF +R+
Sbjct: 277 EREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 321
>AT1G49130.2 | Symbols: | zinc finger (B-box type) family protein |
chr1:18174741-18175811 REVERSE
Length = 319
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 36/45 (80%)
Query: 215 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 259
+REARV RYR+KRKNR FEK IRY RK A+ RPR+KGRF +R+
Sbjct: 270 EREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 314
>AT5G14370.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 21
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: CCT domain
(InterPro:IPR010402); BEST Arabidopsis thaliana protein
match is: CIL (TAIR:AT4G25990.1); Has 1815 Blast hits to
1506 proteins in 139 species: Archae - 0; Bacteria - 8;
Metazoa - 291; Fungi - 53; Plants - 1145; Viruses - 0;
Other Eukaryotes - 318 (source: NCBI BLink). |
chr5:4632147-4633651 REVERSE
Length = 339
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 208 TVQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDT 261
T +L REA +LRY+EKR+NR F K IRY RK AE RPR+KGRF KR D+
Sbjct: 286 TERLWRGHREASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFVKREDS 339
>AT2G33500.2 | Symbols: | zinc finger (B-box type) family protein |
chr2:14188159-14190046 REVERSE
Length = 401
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 41/56 (73%)
Query: 205 ANQTVQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTD 260
N ++ A +R+ + RY+EK+K R+++KTIRY +RKA AETR R+KGRF K TD
Sbjct: 345 TNADLEQMAQNRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKATD 400
>AT2G33500.1 | Symbols: | zinc finger (B-box type) family protein |
chr2:14188159-14190046 REVERSE
Length = 402
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 41/56 (73%)
Query: 205 ANQTVQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTD 260
N ++ A +R+ + RY+EK+K R+++KTIRY +RKA AETR R+KGRF K TD
Sbjct: 346 TNADLEQMAQNRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKATD 401
>AT1G68520.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:25709331-25710749 REVERSE
Length = 406
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 34/48 (70%)
Query: 216 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTEV 263
REARV RYREKR+ R F K IRY RK AE RPR+KGRF KR+ V
Sbjct: 357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRSSIGV 404
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 22/29 (75%)
Query: 1 CKADAAALCVTCDRDIHSANPLARRHERV 29
C AD A LC CD +HSANPLARRHERV
Sbjct: 29 CAADDAFLCHACDGSVHSANPLARRHERV 57
>AT1G04500.1 | Symbols: | zinc finger CONSTANS-related |
chr1:1221757-1224235 REVERSE
Length = 386
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 204 SANQTVQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKR 258
S N+ +LSA R+ ++ RY +KR R F K I+YA RK A++RPR++GRFAK
Sbjct: 276 SFNKVGKLSAEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKN 330
>AT4G25990.1 | Symbols: CIL | CIL | chr4:13191937-13193543 REVERSE
Length = 394
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%)
Query: 216 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKR 258
REA VLRY+EKR+NR F K IRY RK A+ RPR+KGRF +R
Sbjct: 341 REASVLRYKEKRRNRLFSKKIRYQVRKLNADQRPRMKGRFVRR 383
>AT2G47890.1 | Symbols: | zinc finger (B-box type) family protein |
chr2:19608245-19609476 FORWARD
Length = 332
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 43/55 (78%)
Query: 206 NQTVQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTD 260
+ T ++++++R + + RY+EK+K+R++EK IRY SRK AE+R RI+GRFAK D
Sbjct: 277 SMTHEINSLERNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAAD 331
>AT2G33350.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 7 plant
structures; EXPRESSED DURING: L mature pollen stage, M
germinated pollen stage, 4 anthesis; CONTAINS InterPro
DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: zinc finger
CONSTANS-related (TAIR:AT1G04500.1); Has 7688 Blast hits
to 4734 proteins in 129 species: Archae - 8; Bacteria -
25; Metazoa - 148; Fungi - 118; Plants - 919; Viruses -
0; Other Eukaryotes - 6470 (source: NCBI BLink). |
chr2:14134116-14136836 FORWARD
Length = 409
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 200 NGIE--SANQTVQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 257
NG+E + N+ +LS R+ ++ RY +KR R F K I+YA RK A++RPR++GRFAK
Sbjct: 292 NGLEDSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAK 351
>AT5G57180.2 | Symbols: CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS
2); transcription regulator | chr5:23168393-23170763
FORWARD
Length = 435
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 189 DISNPYSRSVSNGIESANQTVQLSAVD-------REARVLRYREKRKNRKFEKTIRYASR 241
D ++P+ + G E+ + +L+ +D REA VLRY+EKR+ R F K IRY R
Sbjct: 350 DKTSPFPDEI-QGSEAVDVNARLAQIDLFGDSGMREASVLRYKEKRRTRLFSKKIRYQVR 408
Query: 242 KAYAETRPRIKGRFAKR 258
K A+ RPR+KGRF +R
Sbjct: 409 KLNADQRPRMKGRFVRR 425
>AT2G33350.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 7 plant
structures; EXPRESSED DURING: L mature pollen stage, M
germinated pollen stage, 4 anthesis; CONTAINS InterPro
DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: zinc finger
CONSTANS-related (TAIR:AT1G04500.1); Has 7691 Blast hits
to 4729 proteins in 129 species: Archae - 8; Bacteria -
25; Metazoa - 148; Fungi - 114; Plants - 918; Viruses -
0; Other Eukaryotes - 6478 (source: NCBI BLink). |
chr2:14134116-14136836 FORWARD
Length = 410
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 200 NGIE--SANQTVQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 257
NG+E + N+ +LS R+ ++ RY +KR R F K I+YA RK A++RPR++GRFAK
Sbjct: 293 NGLEDSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAK 352
>AT5G41380.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G63820.1); Has 952 Blast hits to 949 proteins
in 72 species: Archae - 0; Bacteria - 0; Metazoa - 12;
Fungi - 2; Plants - 890; Viruses - 0; Other Eukaryotes -
48 (source: NCBI BLink). | chr5:16562129-16563553
REVERSE
Length = 307
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 212 SAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTEVEV 265
SA +R+ ++ +YR KR R F KTI+YA RK A++RPRI+GRFA R D VE+
Sbjct: 211 SAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFA-RNDEVVEI 263
>AT3G07650.4 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcription
factor/ zinc ion binding | chr3:2442494-2443901 FORWARD
Length = 372
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 213 AVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 257
+V R V+RY+EK+K RKF+K +RYASRKA A+ R R+KGRF K
Sbjct: 312 SVTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVK 356
>AT3G07650.3 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcription
factor/ zinc ion binding | chr3:2442494-2443901 FORWARD
Length = 372
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 213 AVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 257
+V R V+RY+EK+K RKF+K +RYASRKA A+ R R+KGRF K
Sbjct: 312 SVTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVK 356
>AT3G07650.2 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcription
factor/ zinc ion binding | chr3:2442494-2443901 FORWARD
Length = 372
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 213 AVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 257
+V R V+RY+EK+K RKF+K +RYASRKA A+ R R+KGRF K
Sbjct: 312 SVTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVK 356
>AT3G07650.1 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcription
factor/ zinc ion binding | chr3:2442494-2443901 FORWARD
Length = 372
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 213 AVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 257
+V R V+RY+EK+K RKF+K +RYASRKA A+ R R+KGRF K
Sbjct: 312 SVTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVK 356
>AT1G07050.1 | Symbols: | CONSTANS-like protein-related |
chr1:2164327-2165133 REVERSE
Length = 195
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 32/43 (74%)
Query: 216 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKR 258
REA VLRY+EKR++R F K IRY RK A+ RPR KGRF KR
Sbjct: 151 REASVLRYKEKRQSRLFSKKIRYQVRKLNADKRPRFKGRFVKR 193
>AT1G63820.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN:
flower, root; EXPRESSED DURING: petal differentiation
and expansion stage; CONTAINS InterPro DOMAIN/s: CCT
domain (InterPro:IPR010402); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G41380.1);
Has 907 Blast hits to 907 proteins in 64 species: Archae
- 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 882;
Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
| chr1:23682529-23684050 REVERSE
Length = 293
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 42/61 (68%)
Query: 197 SVSNGIESANQTVQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFA 256
+V +G E + + + S+ +R+ ++ +YR KR R F KTI+YA RK A+ RPR++GRFA
Sbjct: 173 TVFSGDEQSLRVGRYSSEERKEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFA 232
Query: 257 K 257
+
Sbjct: 233 R 233
>AT3G21880.1 | Symbols: | zinc finger (B-box type) family protein |
chr3:7706748-7708093 FORWARD
Length = 364
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 32/46 (69%)
Query: 216 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDT 261
R LRY+EK+ R F K IRYASRKA A+TR R+KGRF K D+
Sbjct: 307 RNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKAGDS 352
>AT1G28050.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:9775768-9777657 REVERSE
Length = 433
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 37/48 (77%)
Query: 213 AVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTD 260
A +R + RY+EKRK R+++KTIRY SRKA A+TR R++GRF K ++
Sbjct: 382 AQNRGDAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVKASE 429
>AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 9); protein binding /
transcription regulator/ two-component response
regulator | chr2:19232874-19234901 FORWARD
Length = 468
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 203 ESANQTVQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTE 262
ESA Q + S REA ++++R KRK+R F+K +RY SRK AE RPR+KG+F + +++
Sbjct: 406 ESAKQ--RWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSD 463
>AT5G02810.1 | Symbols: PRR7, APRR7 | PRR7 (PSEUDO-RESPONSE
REGULATOR 7); transcription regulator/ two-component
response regulator | chr5:638283-641461 REVERSE
Length = 727
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 216 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 259
REA + ++R+KRK R F K +RY SRK AE RPR++G+F ++T
Sbjct: 669 REAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKT 712
>AT5G48250.1 | Symbols: | zinc finger (B-box type) family protein |
chr5:19561719-19563113 REVERSE
Length = 373
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 213 AVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 257
A R V+RY+EK+K RKF+K +RY SRK A+ R R+KGRF K
Sbjct: 313 ATTRNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVK 357
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 1 CKADAAALCVTCDRDIHSANPLARRHERVPVT 32
C++DAA LC++CDR++HSAN L++RH R V
Sbjct: 17 CRSDAACLCLSCDRNVHSANALSKRHSRTLVC 48
>AT2G46790.2 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 9); protein binding /
transcription regulator/ two-component response
regulator | chr2:19233422-19234901 FORWARD
Length = 351
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 203 ESANQTVQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTE 262
ESA Q + S REA ++++R KRK+R F+K +RY SRK AE RPR+KG+F + +++
Sbjct: 289 ESAKQ--RWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSD 346
Query: 263 V 263
Sbjct: 347 A 347
>AT5G60100.1 | Symbols: APRR3, PRR3 | APRR3 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 3); transcription regulator/
two-component response regulator |
chr5:24198215-24200502 REVERSE
Length = 495
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 216 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTD 260
REA ++++R KRK R FEK +RY SRK AE RP +KG+F ++ D
Sbjct: 442 REAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIRKRD 486
>AT5G24470.1 | Symbols: APRR5, PRR5 | APRR5 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 5); transcription regulator/
two-component response regulator | chr5:8356204-8358873
REVERSE
Length = 667
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 36/49 (73%)
Query: 213 AVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDT 261
++ REA + ++R KRK+R +EK +RY SRK AE RPRIKG+F ++ +
Sbjct: 615 SLQREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQVQS 663
>AT3G12890.1 | Symbols: ASML2 | ASML2 (ACTIVATOR OF SPOMIN::LUC2);
transcription activator | chr3:4099223-4100277 FORWARD
Length = 251
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 210 QLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDT 261
+ S +R+ R++RY +K+ R F KTI+Y RK A+ R R++GRFA+ DT
Sbjct: 133 RYSVEERKDRIMRYLKKKNQRNFNKTIKYVCRKTLADRRVRVRGRFARNNDT 184
>AT2G46670.1 | Symbols: | pseudo-response regulator, putative /
timing of CAB expression 1-like protein, putative |
chr2:19164589-19165233 REVERSE
Length = 183
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 203 ESANQTVQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 257
ESA Q + S REA ++++R KRK+R F+K +RY SRK AE RPR+KG+F +
Sbjct: 121 ESAKQ--RWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVR 173
>AT4G27900.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G53420.1); Has 876 Blast hits to 876 proteins
in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 853; Viruses - 0; Other Eukaryotes -
23 (source: NCBI BLink). | chr4:13890858-13892777
FORWARD
Length = 261
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 209 VQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTE 262
+ ++ DR ++ RYR K+ R F + I+YA RKA A+++PRI+GRFAK + +
Sbjct: 207 ISCTSEDRREKLSRYRNKKSKRNFGRKIKYACRKALADSQPRIRGRFAKTEEMQ 260
>AT4G27900.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G53420.1); Has 876 Blast hits to 876 proteins
in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 853; Viruses - 0; Other Eukaryotes -
23 (source: NCBI BLink). | chr4:13890858-13892777
FORWARD
Length = 261
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 209 VQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTE 262
+ ++ DR ++ RYR K+ R F + I+YA RKA A+++PRI+GRFAK + +
Sbjct: 207 ISCTSEDRREKLSRYRNKKSKRNFGRKIKYACRKALADSQPRIRGRFAKTEEMQ 260
>AT5G61380.1 | Symbols: TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB
EXPRESSION 1); transcription regulator/ two-component
response regulator | chr5:24675540-24678176 FORWARD
Length = 618
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 209 VQLSAVDR-EARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTEVEVD 266
V+++ +DR E +L++R KR R F+K IRY +RK AE RPR+KG+F ++ + V VD
Sbjct: 525 VRVNKLDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNG-VNVD 582
>AT5G53420.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G27900.2); Has 863 Blast hits to 863 proteins
in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 840; Viruses - 0; Other Eukaryotes -
23 (source: NCBI BLink). | chr5:21673683-21675469
FORWARD
Length = 264
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 209 VQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 257
V ++ DR ++ RY+ K+ R F + I+YA RKA A+++PR++GRFAK
Sbjct: 211 VSCTSEDRREKLSRYKNKKSRRNFGRKIKYACRKALADSQPRVRGRFAK 259
>AT5G53420.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G27900.2); Has 863 Blast hits to 863 proteins
in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 840; Viruses - 0; Other Eukaryotes -
23 (source: NCBI BLink). | chr5:21674700-21675469
FORWARD
Length = 185
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 209 VQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 257
V ++ DR ++ RY+ K+ R F + I+YA RKA A+++PR++GRFAK
Sbjct: 132 VSCTSEDRREKLSRYKNKKSRRNFGRKIKYACRKALADSQPRVRGRFAK 180
>AT4G25990.2 | Symbols: CIL | CIL | chr4:13191937-13193543 REVERSE
Length = 409
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 15/58 (25%)
Query: 216 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIK---------------GRFAKR 258
REA VLRY+EKR+NR F K IRY RK A+ RPR+K GRF +R
Sbjct: 341 REASVLRYKEKRRNRLFSKKIRYQVRKLNADQRPRMKVKDWHCNIVVVSHQQGRFVRR 398
>AT5G57180.1 | Symbols: CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS
2); transcription regulator | chr5:23168393-23170294
FORWARD
Length = 424
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 189 DISNPYSRSVSNGIESANQTVQLSAVD-------REARVLRYREKRKNRKFEKTIRYASR 241
D ++P+ + G E+ + +L+ +D REA VLRY+EKR+ R F K IRY R
Sbjct: 350 DKTSPFPDEI-QGSEAVDVNARLAQIDLFGDSGMREASVLRYKEKRRTRLFSKKIRYQVR 408
Query: 242 KAYAETRPRIK 252
K A+ RPR+K
Sbjct: 409 KLNADQRPRMK 419
>AT3G21175.1 | Symbols: ZML1, TIFY2B | ZML1 (ZIM-LIKE 1);
sequence-specific DNA binding / transcription factor/
zinc ion binding | chr3:7422832-7424598 FORWARD
Length = 297
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 190 ISNPYSRSVSNGIESANQTVQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRP 249
+ +P+ + G+ Q +LS R A +LR+REKRK R F+KTIRY RK A
Sbjct: 119 LGSPHQNNRVLGLSGTPQ--RLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQ 176
Query: 250 RIKGRFA 256
R KG+F
Sbjct: 177 RKKGQFT 183
>AT3G21175.2 | Symbols: ZML1 | ZML1 (ZIM-LIKE 1); sequence-specific
DNA binding / transcription factor/ zinc ion binding |
chr3:7422832-7424598 FORWARD
Length = 295
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%)
Query: 210 QLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFA 256
+LS R A +LR+REKRK R F+KTIRY RK A R KG+F
Sbjct: 135 RLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFT 181
>AT3G21175.3 | Symbols: ZML1 | ZML1 (ZIM-LIKE 1); transcription
factor | chr3:7422832-7423765 FORWARD
Length = 216
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%)
Query: 210 QLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFA 256
+LS R A +LR+REKRK R F+KTIRY RK A R KG+F
Sbjct: 135 RLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFT 181
>AT5G59990.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: shoot apex,
stem, leaf whorl, flower; EXPRESSED DURING: petal
differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G41380.1); Has 918 Blast hits to 918 proteins
in 64 species: Archae - 0; Bacteria - 0; Metazoa - 1;
Fungi - 0; Plants - 885; Viruses - 0; Other Eukaryotes -
32 (source: NCBI BLink). | chr5:24151206-24153084
REVERSE
Length = 241
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 202 IESANQTVQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 257
IE ++ + S +++ ++ +YR KR R F K I+Y RK A++RPRI+GRFA+
Sbjct: 149 IEGMSKAYKYSPEEKKEKIEKYRSKRNLRNFNKRIKYECRKTLADSRPRIRGRFAR 204