Jatropha Genome Database

JcCB0352111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0352111.10 - phase: 0 /partial
         (62 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03220.1 | Symbols:  | transcriptional co-activator-related |...   107   1e-24
AT5G03500.2 | Symbols:  | transcription coactivator | chr5:87667...   107   2e-24
AT5G03500.1 | Symbols:  | transcription coactivator | chr5:87667...   107   2e-24

>AT5G03220.1 | Symbols:  | transcriptional co-activator-related |
           chr5:767617-768584 REVERSE
          Length = 168

 Score =  107 bits (267), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 57/60 (95%)

Query: 1   IFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKGRREEAQKLLKEALGTLDGQ 60
           IFKNLHHLLNSLRPHQARATLIHI+ELQIQ+RKQAVEDIK RREEAQ+LLK+A  TLDGQ
Sbjct: 109 IFKNLHHLLNSLRPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDGQ 168


>AT5G03500.2 | Symbols:  | transcription coactivator |
           chr5:876673-877660 REVERSE
          Length = 168

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 56/60 (93%)

Query: 1   IFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKGRREEAQKLLKEALGTLDGQ 60
           IFKNLHHLLNSLRPHQARATLIHI+ELQIQ+RKQAVEDIK RREEAQ LLK+A  TLDGQ
Sbjct: 109 IFKNLHHLLNSLRPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDGQ 168


>AT5G03500.1 | Symbols:  | transcription coactivator |
           chr5:876673-877660 REVERSE
          Length = 168

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 56/60 (93%)

Query: 1   IFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKGRREEAQKLLKEALGTLDGQ 60
           IFKNLHHLLNSLRPHQARATLIHI+ELQIQ+RKQAVEDIK RREEAQ LLK+A  TLDGQ
Sbjct: 109 IFKNLHHLLNSLRPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDGQ 168