Jatropha Genome Database

JcCB0351641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0351641.10 + phase: 0 /partial
         (130 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39670.1 | Symbols:  | radical SAM domain-containing protein ...   135   9e-33
AT2G39670.2 | Symbols:  | radical SAM domain-containing protein ...   125   5e-30

>AT2G39670.1 | Symbols:  | radical SAM domain-containing protein |
           chr2:16534303-16536986 FORWARD
          Length = 428

 Score =  135 bits (339), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 69/128 (53%), Positives = 87/128 (67%), Gaps = 13/128 (10%)

Query: 12  VCSVPLARAVRQPHSFT---------IVSSRKLRTTSSAVSPPRTSHVDPRVLLGMSEPE 62
           V SVP++R V + HS           +V S K      +  P RT HVD  VL+GMSEPE
Sbjct: 16  VFSVPISRMVVRRHSLATTFSAAATTVVPSPK----PVSAKPARTPHVDSHVLIGMSEPE 71

Query: 63  LQQLANDFGQQSYRGKQLHHLIYERKVKEIQDFSQLPQAFRHELEEAGWKIGRSPIYRTV 122
           LQ+LA + GQ+ YRGKQLHHLIY+RKV +++DFS LP  FR  L + G+K+GRSPIY+TV
Sbjct: 72  LQELAINLGQEGYRGKQLHHLIYKRKVNKVEDFSNLPLTFRKGLVDGGFKVGRSPIYQTV 131

Query: 123 TAADGTVK 130
           TA DGT+K
Sbjct: 132 TATDGTIK 139


>AT2G39670.2 | Symbols:  | radical SAM domain-containing protein |
           chr2:16534303-16536986 FORWARD
          Length = 431

 Score =  125 bits (315), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 86/131 (65%), Gaps = 16/131 (12%)

Query: 12  VCSVPLARAVRQPHSFT---------IVSSRKLRTTSSAVSPPRTSHVDPRVLLGMSEPE 62
           V SVP++R V + HS           +V S K      +  P RT HVD  VL+GMSEPE
Sbjct: 16  VFSVPISRMVVRRHSLATTFSAAATTVVPSPK----PVSAKPARTPHVDSHVLIGMSEPE 71

Query: 63  LQQLANDF---GQQSYRGKQLHHLIYERKVKEIQDFSQLPQAFRHELEEAGWKIGRSPIY 119
           LQ+LA +     Q+ YRGKQLHHLIY+RKV +++DFS LP  FR  L + G+K+GRSPIY
Sbjct: 72  LQELAINLVLIFQEGYRGKQLHHLIYKRKVNKVEDFSNLPLTFRKGLVDGGFKVGRSPIY 131

Query: 120 RTVTAADGTVK 130
           +TVTA DGT+K
Sbjct: 132 QTVTATDGTIK 142