Jatropha Genome Database

JcCB0347911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0347911.10 + phase: 0 /partial
         (316 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51160.1 | Symbols: MUR1, MUR_1, GMD2 | MUR1 (MURUS 1); GDP-m...   561   e-160
AT5G66280.1 | Symbols: GMD1 | GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATAS...   559   e-160
AT4G30440.1 | Symbols: GAE1 | GAE1 (UDP-D-GLUCURONATE 4-EPIMERAS...    55   7e-08
AT4G12250.1 | Symbols: GAE5 | GAE5 (UDP-D-GLUCURONATE 4-EPIMERAS...    50   1e-06

>AT3G51160.1 | Symbols: MUR1, MUR_1, GMD2 | MUR1 (MURUS 1);
           GDP-mannose 4,6-dehydratase | chr3:19007232-19008353
           REVERSE
          Length = 373

 Score =  561 bits (1447), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/317 (83%), Positives = 287/317 (90%), Gaps = 2/317 (0%)

Query: 1   MATKDTAG-SGSATVNGDASAATPPQKHKIALITGITGQDGSYLTEFLLNKGYEVHGLIR 59
           MA+++    S S ++    + +T  +  KIALITGITGQDGSYLTEFLL KGYEVHGLIR
Sbjct: 1   MASENNGSRSDSESITAPKADSTVVEPRKIALITGITGQDGSYLTEFLLGKGYEVHGLIR 60

Query: 60  RSSNFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVA 119
           RSSNFNTQRINHIYIDPHN +KA MKLHYADLTDASSLRRW+D I PDEVYNLAAQSHVA
Sbjct: 61  RSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVA 120

Query: 120 VSFEIPDYTADVVATGALRLLEAVRSHIAATGRSHIRYYQAGSSEMFGSTPPPQSETTPF 179
           VSFEIPDYTADVVATGALRLLEAVRSH   +GR+ ++YYQAGSSEMFGSTPPPQSETTPF
Sbjct: 121 VSFEIPDYTADVVATGALRLLEAVRSHTIDSGRT-VKYYQAGSSEMFGSTPPPQSETTPF 179

Query: 180 HPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKTG 239
           HPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRA+GRIK G
Sbjct: 180 HPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVG 239

Query: 240 LQNKLFLGNLSASRDWGFAGDYVEAMWMMLQQEMPDDYVVATEESHTVEEFLEVAFGYVG 299
           LQ KLFLGNL ASRDWGFAGDYVEAMW+MLQQE PDDYVVATEE HTVEEFL+V+FGY+G
Sbjct: 240 LQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLG 299

Query: 300 LNWKDHVVIDKRYFRPA 316
           LNWKD+V ID+RYFRPA
Sbjct: 300 LNWKDYVEIDQRYFRPA 316


>AT5G66280.1 | Symbols: GMD1 | GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE
           1); GDP-mannose 4,6-dehydratase/ binding / catalytic/
           coenzyme binding | chr5:26476434-26477519 FORWARD
          Length = 361

 Score =  559 bits (1441), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 263/305 (86%), Positives = 280/305 (91%), Gaps = 4/305 (1%)

Query: 11  SATVNGDASAATPPQKHKIALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRIN 70
           S ++NGD+    P    KIAL+TGITGQDGSYLTEFLL KGYEVHGLIRRSSNFNTQR+N
Sbjct: 3   SRSLNGDSDIVKP---RKIALVTGITGQDGSYLTEFLLEKGYEVHGLIRRSSNFNTQRLN 59

Query: 71  HIYIDPHNAHKARMKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTAD 130
           HIY+DPHN +KA MKLHY DL+DASSLRRWLD I PDEVYNLAAQSHVAVSFEIPDYTAD
Sbjct: 60  HIYVDPHNVNKALMKLHYGDLSDASSLRRWLDVIKPDEVYNLAAQSHVAVSFEIPDYTAD 119

Query: 131 VVATGALRLLEAVRSHIAATGRSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKC 190
           VVATGALRLLEAVRSH    GR+ I+YYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKC
Sbjct: 120 VVATGALRLLEAVRSHNIDNGRA-IKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKC 178

Query: 191 AAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKTGLQNKLFLGNLS 250
           AAHWYTVNYREAYGL+ACNGILFNHESPRRGENFVTRKITRA+GRIK GLQ KLFLGN+ 
Sbjct: 179 AAHWYTVNYREAYGLYACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNIQ 238

Query: 251 ASRDWGFAGDYVEAMWMMLQQEMPDDYVVATEESHTVEEFLEVAFGYVGLNWKDHVVIDK 310
           ASRDWGFAGDYVEAMW+MLQQE PDDYVVATEESHTV+EFL+V+FGYVGLNWKDHV IDK
Sbjct: 239 ASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEESHTVKEFLDVSFGYVGLNWKDHVEIDK 298

Query: 311 RYFRP 315
           RYFRP
Sbjct: 299 RYFRP 303


>AT4G30440.1 | Symbols: GAE1 | GAE1 (UDP-D-GLUCURONATE 4-EPIMERASE
           1); UDP-glucuronate 4-epimerase/ catalytic |
           chr4:14881976-14883265 REVERSE
          Length = 429

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 87/195 (44%), Gaps = 29/195 (14%)

Query: 30  ALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRINHIYIDPHNAHKARMKLHYA 89
            L+TG TG  GS+++  L  +G  V GL     NFN       Y DP +  +AR  L  +
Sbjct: 90  VLVTGATGFVGSHVSLALRKRGDGVVGL----DNFNN------YYDP-SLKRARRSLLSS 138

Query: 90  --------DLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLE 141
                   DL DA  L +  D +    V +LAAQ+ V  + E P         G + LLE
Sbjct: 139 RGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVHSNIAGLVNLLE 198

Query: 142 AVRSHIAATGRSHIRYYQAGSSEMFG---STPPPQSETTPFHPRSPYAASKCAAHWYTVN 198
             +   AA  +  I +  A SS ++G     P  +S+ T   P S YAA+K A    T  
Sbjct: 199 ICK---AANPQPAIVW--ASSSSVYGLNEKVPFSESDRTD-QPASLYAATKKAGEEITHT 252

Query: 199 YREAYGLFACNGILF 213
           Y   YGL A  G+ F
Sbjct: 253 YNHIYGL-AITGLRF 266


>AT4G12250.1 | Symbols: GAE5 | GAE5 (UDP-D-GLUCURONATE 4-EPIMERASE
           5); UDP-glucuronate 4-epimerase/ catalytic |
           chr4:7289538-7290848 REVERSE
          Length = 436

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 84/200 (42%), Gaps = 25/200 (12%)

Query: 24  PQKHK--IALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRINHIYIDPHNAHK 81
           P+ H     L+TG +G  G++++  L  +G  V GL     NFN       Y DP    +
Sbjct: 90  PRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGL----DNFNR------YYDP-KLKR 138

Query: 82  ARMKLHY--------ADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVA 133
           AR  L           D+ DA  LR+  D +L   V +LAAQ+ V  + + P    +   
Sbjct: 139 ARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQAGVRYAMQNPGSYVNSNI 198

Query: 134 TGALRLLEAVRSHIAATGRSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAH 193
            G + LLE  +S   A  +  I +  + S     S  P   +     P S YAA+K A  
Sbjct: 199 AGFVNLLEVSKS---ANPQPAIVWASSSSVYGLNSKVPFSEKDRTDQPASLYAATKKAGE 255

Query: 194 WYTVNYREAYGLFACNGILF 213
                Y   YGL +  G+ F
Sbjct: 256 GIAHTYNHIYGL-SLTGLRF 274