Jatropha Genome Database

JcCB0342871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0342871.10 - phase: 1 /pseudo/partial
         (162 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | SSI1 (SUPPRESSOR OF SA...   222   9e-59
AT3G01180.1 | Symbols: AtSS2 | AtSS2 (starch synthase 2); transf...   152   1e-37
AT1G32900.1 | Symbols:  | starch synthase, putative | chr1:11920...   101   2e-22
AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | ATSS4; transferase, tr...    78   3e-15
AT1G11720.1 | Symbols: ATSS3 | ATSS3 (starch synthase 3); starch...    75   2e-14

>AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | SSI1 (SUPPRESSOR OF
           SALICYLIC ACID INSENSITIVITY 1); starch synthase/
           transferase, transferring glycosyl groups |
           chr5:8266934-8270860 FORWARD
          Length = 652

 Score =  222 bits (565), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 103/133 (77%), Positives = 116/133 (87%), Gaps = 1/133 (0%)

Query: 8   QSKKCFI-WVTNGINVSEWDPSSDEHIAFHYSADDLSGKVQCKIALQKELGLPVRPDCPL 66
            S+K  I  +TNGINV EW+PS+DEHI FHYSADD+S K++CK+ALQKELGLP+RP+CP+
Sbjct: 401 SSRKSVINGITNGINVDEWNPSTDEHIPFHYSADDVSEKIKCKMALQKELGLPIRPECPM 460

Query: 67  IGFIGRLDYQKGIDLIRWAVPELMEDDIQFVMLGSGDRLYEEWMRVSESTYRDKFRGWVG 126
           IGFIGRLDYQKGIDLI+ A P+LM DDIQFVMLGSGD  YE WMR  E TYRDKFRGWVG
Sbjct: 461 IGFIGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGSGDPKYESWMRSMEETYRDKFRGWVG 520

Query: 127 FNVPISHRITAGC 139
           FNVPISHRITAGC
Sbjct: 521 FNVPISHRITAGC 533


>AT3G01180.1 | Symbols: AtSS2 | AtSS2 (starch synthase 2);
           transferase, transferring glycosyl groups |
           chr3:62456-65678 REVERSE
          Length = 792

 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 93/132 (70%), Gaps = 5/132 (3%)

Query: 13  FIWVTNGINVSEWDPSSDEHIA----FHYSADDLS-GKVQCKIALQKELGLPVRPDCPLI 67
           F  + NGI+  EW+P  D ++      +YS ++L  GK QCK ALQKELGLPVRPD PLI
Sbjct: 550 FRGIVNGIDTQEWNPEFDTYLHSDDYTNYSLENLHIGKPQCKAALQKELGLPVRPDVPLI 609

Query: 68  GFIGRLDYQKGIDLIRWAVPELMEDDIQFVMLGSGDRLYEEWMRVSESTYRDKFRGWVGF 127
           GFIGRLD+QKG+DLI  AVP +M  D+Q VMLG+G    EE +R  E  YRDK RGWVGF
Sbjct: 610 GFIGRLDHQKGVDLIAEAVPWMMSQDVQLVMLGTGRPDLEEVLRQMEHQYRDKARGWVGF 669

Query: 128 NVPISHRITAGC 139
           +V  +HRITAG 
Sbjct: 670 SVKTAHRITAGA 681


>AT1G32900.1 | Symbols:  | starch synthase, putative |
           chr1:11920582-11923506 REVERSE
          Length = 610

 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 78/130 (60%), Gaps = 1/130 (0%)

Query: 11  KCFIWVTNGINVSEWDPSSDEHIAFHYSADDLS-GKVQCKIALQKELGLPVRPDCPLIGF 69
           K    + NG++V EW+PS+D++I   Y    ++  K   K ALQ  +GLPV  D P+IGF
Sbjct: 347 KTVSGIINGMDVQEWNPSTDKYIDIKYDITTVTDAKPLIKEALQAAVGLPVDRDVPVIGF 406

Query: 70  IGRLDYQKGIDLIRWAVPELMEDDIQFVMLGSGDRLYEEWMRVSESTYRDKFRGWVGFNV 129
           IGRL+ QKG D++  A+ + M  ++Q V+LG+G +  E  +   E  +  K  G   FNV
Sbjct: 407 IGRLEEQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNV 466

Query: 130 PISHRITAGC 139
           P++H ITAG 
Sbjct: 467 PLAHMITAGA 476


>AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | ATSS4; transferase,
           transferring glycosyl groups | chr4:10082221-10087044
           FORWARD
          Length = 1040

 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 4/133 (3%)

Query: 11  KCFIWVTNGINVSEWDPSSDEHIAFHYSADDLSGKVQCKIALQKELGL-PVRPDCPLIGF 69
           K FI + NGI+   W+P++D  +   ++A DL GK + K AL+K+LGL       PL+G 
Sbjct: 787 KKFIGILNGIDTDSWNPATDPFLKAQFNAKDLQGKEENKHALRKQLGLSSAESRRPLVGC 846

Query: 70  IGRLDYQKGIDLIRWAVPELMEDDIQFVMLGSG--DRLYEEWMRVSES-TYRDKFRGWVG 126
           I RL  QKG+ LIR A+   +E   QFV+LGS     +  E+  + +     D  R  + 
Sbjct: 847 ITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVPHIQREFEGIEQQFKSHDHVRLLLK 906

Query: 127 FNVPISHRITAGC 139
           ++  +SH I A  
Sbjct: 907 YDEALSHTIYAAS 919


>AT1G11720.1 | Symbols: ATSS3 | ATSS3 (starch synthase 3); starch
           synthase/ transferase, transferring glycosyl groups |
           chr1:3952511-3956840 FORWARD
          Length = 1025

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 7/133 (5%)

Query: 13  FIWVTNGINVSEWDPSSDEHIAFHYSADDL-SGKVQCKIALQKELGLPVRPDCPLIGFIG 71
           F  + NGI+   WDP +D  I   Y+++++  GK   K  LQ  LGL    D P++G I 
Sbjct: 778 FHGIINGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEELQNRLGLK-SADFPVVGIIT 836

Query: 72  RLDYQKGIDLIRWAVPELMEDDIQFVMLGSG--DRLYEEWMRVS---ESTYRDKFRGWVG 126
           RL +QKGI LI+ A+   +E + Q V+LGS    R+  +++ ++    S++ D+ R  + 
Sbjct: 837 RLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHGDRARLVLT 896

Query: 127 FNVPISHRITAGC 139
           ++ P+SH I AG 
Sbjct: 897 YDEPLSHLIYAGA 909