Jatropha Genome Database

JcCB0342441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0342441.10 + phase: 0 
         (415 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11880.1 | Symbols:  | diaminopimelate decarboxylase, putativ...    79   7e-15
AT3G14390.1 | Symbols:  | diaminopimelate decarboxylase, putativ...    78   9e-15

>AT5G11880.1 | Symbols:  | diaminopimelate decarboxylase, putative /
           DAP carboxylase, putative | chr5:3827806-3829942 REVERSE
          Length = 489

 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 158/394 (40%), Gaps = 52/394 (13%)

Query: 31  LTDFMQSIIFNKQNDKEPFYVLDLGVVVSLMDKWTRALPMVRPF--YAVKCNPDRALLGT 88
           + D M+++      +K PFY+     +   ++ +  AL  VR    YA+K N +  +L  
Sbjct: 87  VQDIMETV------EKRPFYLYSKPQITRNLEAYKEALEGVRSVIGYAIKANNNLKILEH 140

Query: 89  LASLGSNFDCASRAEIESVLSLGVSPERIVYANPCKAESHIQYAASVGVNLTTFDSRDEL 148
           L SLG      S  E+   L  G  P + ++    K+   +  AA  GV     DS  +L
Sbjct: 141 LRSLGCGAVLVSGNELRLALLAGFDPTKCIFNGNGKSLEDLVLAAQEGV-FVNVDSEFDL 199

Query: 149 DKIRKWHPLCG----LLIRIKAPDDGGARCPL------GPKYGALAEEVKPLLQAAQA-- 196
           + I +   + G    +L+RI  PD      P         K+G   E+++  L   +A  
Sbjct: 200 NNIVEASRISGKQVNVLLRIN-PDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDEVKAHP 258

Query: 197 AHLKVVGVSFHIGSGATNSRAYRGXXXXXXXXXXXXSRLGMPKMNVLNIGGGFTAGLQFD 256
             LK+VG   H+GS  T    +R              R G  +++ LNIGGG   G+ + 
Sbjct: 259 KELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGF-EVSYLNIGGGL--GIDYY 315

Query: 257 DAAVAIRSALQAY-----FPNEPELKIISEPGRFFAESAFTLATNIIGKRVRGELREYWI 311
            A   + + +             +L +I EPGR    +      ++ G +  G  + + +
Sbjct: 316 HAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVNHVTGVKTNGT-KNFIV 374

Query: 312 NDGIYGSMNCLL-------YDHATVTCAPLSCASNRGNPTCKGLKRYSSTVFGPTCDALD 364
            DG   SM  L+       Y H  +            +PT    +     V GP C++ D
Sbjct: 375 IDG---SMAELIRPSLYDAYQHIELV-----------SPTPPEAEVTKFDVVGPVCESAD 420

Query: 365 TVLKGHQLPELQINDWLVFPNMGAYTVAAGSNFN 398
            + K  +LP       LV  + GAY ++  S +N
Sbjct: 421 FLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYN 454


>AT3G14390.1 | Symbols:  | diaminopimelate decarboxylase, putative /
           DAP carboxylase, putative | chr3:4806771-4808954 FORWARD
          Length = 484

 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 158/394 (40%), Gaps = 52/394 (13%)

Query: 31  LTDFMQSIIFNKQNDKEPFYVLDLGVVVSLMDKWTRALPMVRPF--YAVKCNPDRALLGT 88
           + D M+S+      ++ PFY+     +   ++ +  AL  V     YA+K N +  +L  
Sbjct: 82  VEDIMESV------ERRPFYLYSKPQITRNLEAYKEALEGVSSVIGYAIKANNNLKILEH 135

Query: 89  LASLGSNFDCASRAEIESVLSLGVSPERIVYANPCKAESHIQYAASVGVNLTTFDSRDEL 148
           L SLG      S  E+   L  G  P + ++    K+   +  AA  GV     DS  +L
Sbjct: 136 LRSLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKSLEDLVLAAQEGV-FVNVDSEFDL 194

Query: 149 DKIRKWHPLCG----LLIRIKAPDDGGARCPL------GPKYGALAEEVKPLLQAAQA-- 196
           + I +   + G    +L+RI  PD      P         K+G   E+++  L   +A  
Sbjct: 195 NNIVEASRISGKQVNVLLRIN-PDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDQVKAHP 253

Query: 197 AHLKVVGVSFHIGSGATNSRAYRGXXXXXXXXXXXXSRLGMPKMNVLNIGGGFTAGLQFD 256
             LK+VG   H+GS  T    +R              R G  +++ LNIGGG   G+ + 
Sbjct: 254 KELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGF-EVSYLNIGGGL--GIDYY 310

Query: 257 DAAVAIRSALQAY-----FPNEPELKIISEPGRFFAESAFTLATNIIGKRVRGELREYWI 311
            A   + + +             +L +I EPGR    +      ++ G +  G  + + +
Sbjct: 311 HAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVNHVTGVKTNGT-KNFIV 369

Query: 312 NDGIYGSMNCLL-------YDHATVTCAPLSCASNRGNPTCKGLKRYSSTVFGPTCDALD 364
            D   GSM  L+       Y H  +   P         P    + ++   V GP C++ D
Sbjct: 370 ID---GSMAELIRPSLYDAYQHIELVSPP---------PAEAEVTKFD--VVGPVCESAD 415

Query: 365 TVLKGHQLPELQINDWLVFPNMGAYTVAAGSNFN 398
            + K  +LP       LV  + GAY ++  S +N
Sbjct: 416 FLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYN 449