Jatropha Genome Database
- JcCB0341981.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0341981.10 + phase: 0 /partial
(348 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);... 302 2e-82
AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);... 248 3e-66
AT1G77850.1 | Symbols: ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17);... 67 1e-11
AT3G17600.1 | Symbols: IAA31 | IAA31 (INDOLE-3-ACETIC ACID INDUC... 51 9e-07
AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);... 49 6e-06
>AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);
miRNA binding / transcription factor |
chr2:12114331-12116665 FORWARD
Length = 693
Score = 302 bits (774), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 191/370 (51%), Positives = 233/370 (62%), Gaps = 59/370 (15%)
Query: 1 VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRVPQHFDFPLDGQ---LQW 57
V WDEPDLLQNVKRVSPWLVELVSNMP IHLSPFS PRKK+R+PQ F+FP G +
Sbjct: 361 VAWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFS-PRKKIRIPQPFEFPFHGTKFPIFS 419
Query: 58 QSFSGNPLGPSSPLCCLS---DNTPAGIQGARHAQ--FG---------ISLSDLQLNNKL 103
F+ N G S +C LS +N PAGIQGAR AQ FG ++LS NNKL
Sbjct: 420 PGFANNGGGES--MCYLSNDNNNAPAGIQGARQAQQLFGSPSPSLLSDLNLSSYTGNNKL 477
Query: 104 QS-GMFLSSLQRFNSHSRISESFVKGQTNSNENISCLLTMGNSNTNSDKSD---NVKRHQ 159
S MFLSS + H + +S NSN NISC LTMGN DK +VK HQ
Sbjct: 478 HSPAMFLSSFNPRHHHYQARDS-----ENSN-NISCSLTMGNPAMVQDKKKSVGSVKTHQ 531
Query: 160 FLLFGQPILTEQQISCSCSTDAVSQVITGKTYSDESPEKAKIHDVLGSAPEKQTSPEKTA 219
F+LFGQPILTEQ QV+ K + +E E + ++
Sbjct: 532 FVLFGQPILTEQ------------QVMNRKRFLEEEAEAEEEKGLV-------------- 565
Query: 220 STGFSWQSSTETGLDAGHCKVFLESEDVGRTLDLSVLSSYEELHSKLANMFGI-ERSEML 278
+ G +W S + GL+ GHCKVF+ESEDVGRTLDLSV+ SY+EL+ KLA MF I ERS++L
Sbjct: 566 ARGLTWNYSLQ-GLETGHCKVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHIEERSDLL 624
Query: 279 SHVLYRDAKGAVKQTGEEPFSVFTKTARRLTILMNPAGSDNNGRPWVTGMRRAENGLEAS 338
+HV+YRDA G +K+ G+EPFS F K +RLTI M+ G DN + W+TG+R ENG++AS
Sbjct: 625 THVVYRDANGVIKRIGDEPFSDFMKATKRLTIKMD-IGGDNVRKTWITGIRTGENGIDAS 683
Query: 339 NKTGPLSIFA 348
KTGPLSIFA
Sbjct: 684 TKTGPLSIFA 693
>AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);
miRNA binding / transcription factor |
chr4:14703369-14705564 REVERSE
Length = 670
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 158/334 (47%), Positives = 193/334 (57%), Gaps = 59/334 (17%)
Query: 1 VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRVPQHFDFP-LDGQLQWQS 59
V WDEPDLLQNVKRV+PWLVELVSN+ I L+ FSPPRKK+R+PQH D+ L + S
Sbjct: 363 VAWDEPDLLQNVKRVNPWLVELVSNVHPIPLTSFSPPRKKMRLPQHPDYNNLINSIPVPS 422
Query: 60 FSGNPLGPSSPLCCLSDNTPAGIQGARH---AQFGISLSDLQ---LNNKLQSGMFLSSLQ 113
F NPL SSPL + DN P G+QGARH +G+S SDL LN S
Sbjct: 423 FPSNPLIRSSPLSSVLDNVPVGLQGARHNAHQYYGLSSSDLHHYYLNRPPPPPPPSSLQL 482
Query: 114 RFNSHSRISESFVKGQTNSNENISCLLTMGNSNTNSDKSDNVKRHQFLLFGQPILTEQQI 173
+ R ++ NE C LTMG + N KS K+ +LFG+ IL E+Q+
Sbjct: 483 SPSLGLRNIDT-------KNEKGFCFLTMGTTPCNDTKS---KKSHIVLFGKLILPEEQL 532
Query: 174 SCSCSTDAV----SQV---------ITGKTYS--DE-SPEKAKIHDVLGSAPEKQTSPEK 217
S STD +Q+ + G+ +S DE SP K+HD
Sbjct: 533 SEKGSTDTANIEKTQISSGGSNQNGVAGREFSSSDEGSPCSKKVHDA------------- 579
Query: 218 TASTGFSWQSSTETGLDAGHCKVFLESEDVGRTLDLSVLSSYEELHSKLANMFGIERSEM 277
+GL+ GHCKVF+ES+DVGRTLDLSVL SYEEL KL++MFGI++SEM
Sbjct: 580 -------------SGLETGHCKVFMESDDVGRTLDLSVLGSYEELSRKLSDMFGIKKSEM 626
Query: 278 LSHVLYRDAKGAVKQTGEEPFSVFTKTARRLTIL 311
LS VLYRDA GA+K G EPFS F KTARRLTIL
Sbjct: 627 LSSVLYRDASGAIKYAGNEPFSEFLKTARRLTIL 660
>AT1G77850.1 | Symbols: ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17);
transcription factor | chr1:29272405-29275193 FORWARD
Length = 585
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 7/96 (7%)
Query: 1 VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRVPQ---HFDFPLDGQLQW 57
+TWDEP++LQNVKRV+PW VE+ ++ +H +PF PP K+L+ PQ F DG++ +
Sbjct: 357 ITWDEPEILQNVKRVNPWQVEIAAHATQLH-TPF-PPAKRLKYPQPGGGFLSGDDGEILY 414
Query: 58 -QSFSGNPLGPSSPLCCLSDNT-PAGIQGARHAQFG 91
QS + P S +T PAG+QGAR FG
Sbjct: 415 PQSGLSSAAAPDPSPSMFSYSTFPAGMQGARQYDFG 450
>AT3G17600.1 | Symbols: IAA31 | IAA31 (INDOLE-3-ACETIC ACID
INDUCIBLE 31); transcription factor |
chr3:6020281-6021040 REVERSE
Length = 158
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 238 CKVFLESEDVGRTLDLSVLSSYEELHSKLANMFGIE----RSEMLSHVL-YRDAKGAVKQ 292
KV++E +GR LDL V S YE L L++MF + HVL Y D G
Sbjct: 75 VKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSIICGNRDRKHHVLTYEDKDGDWMM 134
Query: 293 TGEEPFSVFTKTARRLTI 310
G+ P+ +F +T RRL I
Sbjct: 135 VGDIPWDMFLETVRRLKI 152
>AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);
transcription factor | chr3:22888171-22891179 FORWARD
Length = 602
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 196 PEKAKIHDVLGSAPEKQTSPEKTASTGFSWQSSTETGLDAGHCKVFLESEDVGRTLDLSV 255
P+ + D G+A E T S Q +T KV ++ VGR +DL++
Sbjct: 456 PQDKQPMDTCGAA----KCQEPITPTSMSEQKKQQTS--RSRTKVQMQGIAVGRAVDLTL 509
Query: 256 LSSYEELHSKLANMFGIERSEMLSH----VLYRDAKGAVKQTGEEPFSVFTKTARRLTI 310
L SY+EL +L MF I+ ++L+ V++ D +G + G++P++ F K A+++ I
Sbjct: 510 LKSYDELIDELEEMFEIQ-GQLLARDKWIVVFTDDEGDMMLAGDDPWNEFCKMAKKIFI 567