Jatropha Genome Database

JcCB0341321.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0341321.20 - phase: 0 /partial
         (115 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44140.2 | Symbols:  | autophagy 4a (APG4a) | chr2:18255106-1...   106   3e-24
AT2G44140.1 | Symbols:  | autophagy 4a (APG4a) | chr2:18255106-1...   104   1e-23
AT3G59950.1 | Symbols:  | autophagy 4b (APG4b) | chr3:22144468-2...   102   3e-23

>AT2G44140.2 | Symbols:  | autophagy 4a (APG4a) |
           chr2:18255106-18257206 REVERSE
          Length = 422

 Score =  106 bits (264), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/71 (61%), Positives = 59/71 (83%)

Query: 1   VVNISRDGIGADTSSYHSDFIRHIPLESIDPSLAIGFYCRDKDDFDEFCFLASKLADDSH 60
           VV ++++    DTSSYH + +R++PLES+DPSLA+GFYCRDKDDFD+FC  A KLA++S+
Sbjct: 326 VVTVNKETPDVDTSSYHCNVLRYVPLESLDPSLALGFYCRDKDDFDDFCLRALKLAEESN 385

Query: 61  GAPLFTVAHSH 71
           GAPLFTV  +H
Sbjct: 386 GAPLFTVTQTH 396


>AT2G44140.1 | Symbols:  | autophagy 4a (APG4a) |
           chr2:18255106-18257165 REVERSE
          Length = 467

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 59/71 (83%)

Query: 1   VVNISRDGIGADTSSYHSDFIRHIPLESIDPSLAIGFYCRDKDDFDEFCFLASKLADDSH 60
           VV ++++    DTSSYH + +R++PLES+DPSLA+GFYCRDKDDFD+FC  A KLA++S+
Sbjct: 371 VVTVNKETPDVDTSSYHCNVLRYVPLESLDPSLALGFYCRDKDDFDDFCLRALKLAEESN 430

Query: 61  GAPLFTVAHSH 71
           GAPLFTV  +H
Sbjct: 431 GAPLFTVTQTH 441


>AT3G59950.1 | Symbols:  | autophagy 4b (APG4b) |
           chr3:22144468-22146887 REVERSE
          Length = 477

 Score =  102 bits (255), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 73/115 (63%), Gaps = 12/115 (10%)

Query: 1   VVNISRDGIGADTSSYHSDFIRHIPLESIDPSLAIGFYCRDKDDFDEFCFLASKLADDSH 60
           VV + ++    DTSSYH + +R++PLES+DPSLA+GFYC+ KDDFD+FC  A+KLA DS+
Sbjct: 375 VVTVKKENQDVDTSSYHCNTLRYVPLESLDPSLALGFYCQHKDDFDDFCIRATKLAGDSN 434

Query: 61  GAPLFTVAHSHKLPKSVGRTDTSNDNSGVQEDDSLGVMPMNDAEAPVNEDDWQLL 115
           GAPLFTV  SH+            ++ G+ E  S       +     +EDDWQLL
Sbjct: 435 GAPLFTVTQSHR-----------RNDCGIAETSSS-TETSTEISGEEHEDDWQLL 477