Jatropha Genome Database

JcCB0341321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0341321.10 + phase: 2 /partial
         (214 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59940.1 | Symbols:  | kelch repeat-containing F-box family p...   124   5e-29
AT2G44130.1 | Symbols:  | kelch repeat-containing F-box family p...   109   1e-24
AT1G80440.1 | Symbols:  | kelch repeat-containing F-box family p...    66   2e-11
AT1G15670.1 | Symbols:  | kelch repeat-containing F-box family p...    63   1e-10
AT5G60570.1 | Symbols:  | kelch repeat-containing F-box family p...    49   2e-06

>AT3G59940.1 | Symbols:  | kelch repeat-containing F-box family
           protein | chr3:22143009-22144265 FORWARD
          Length = 418

 Score =  124 bits (311), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 102/217 (47%), Gaps = 17/217 (7%)

Query: 1   DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
           D  KNAL SAEVYD+E++EW +LP M E RDECHG +   D  F V+SGYGT++QGQFRS
Sbjct: 216 DDQKNALRSAEVYDVEKDEWSMLPPMTEGRDECHGFSMATDPGFCVLSGYGTETQGQFRS 275

Query: 61  DAECYDPDNGVWHKITGVWPFSSTSPRGATTIVSSVNKNEHQW--RW-FLGGXXXXXXXX 117
           D E YDP    W  I  VWPF   SPRG T   ++    + +    W F+          
Sbjct: 276 DGEIYDPITNSWSTIENVWPFPDLSPRGRTAAAAAEFPGDFRGCRLWCFIDSERQSQPHW 335

Query: 118 IHQNDEIRWELIRSNPVPDCGKNPFVMNIGYGDNKNRVFLVXXXXXXXXXXXXXXXXXXX 177
             ++D ++W++I      D  + P             VF                     
Sbjct: 336 EVEDDSMKWKVIM-----DTIRLPVT-------TMTSVF--AGSLSGQAVAMIGGGGEES 381

Query: 178 XTFILDKDCNNGRTKWNHVHTPAEFSGFPFSACYLTI 214
            T ++         KW+HV+TP+ FS  PFS   + +
Sbjct: 382 GTMMVKTTAEKNGGKWSHVNTPSGFSSLPFSCSSIYV 418


>AT2G44130.1 | Symbols:  | kelch repeat-containing F-box family
           protein | chr2:18253731-18254960 FORWARD
          Length = 409

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 101/211 (47%), Gaps = 19/211 (9%)

Query: 1   DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
           D  KNAL SAEVYD+E++EW  +  M E RDEC G A     RF V+SGYGT+SQG+FRS
Sbjct: 209 DDQKNALRSAEVYDVEKDEWSSVTPMTEGRDECQGFAVGMGLRFCVLSGYGTESQGRFRS 268

Query: 61  DAECYDPDNGVWHKITGVWPFSSTSPRGATTIVSSVNKNEHQWRWFLGGXXXXXXXXIHQ 120
           D E YDP    W +I  VW F  TSPRG T    + +       W               
Sbjct: 269 DGEIYDPATDSWSRIDNVWRFPDTSPRGRT----AGDFRSSSTLWCFTDTDLQSERRWET 324

Query: 121 NDEIR-WEL-IRSNPVPDCGKNPFVMNIGYGDNKNRVFLVXXXXXXXXXXXXXXXXXXXX 178
           ND+ R  +L ++S  +P  G + F  ++G G++   V ++                    
Sbjct: 325 NDDSRNLKLDLQSIQLPMTGSSVFAGSLG-GES---VVMI--------GGKRESEGEGEG 372

Query: 179 TFILDKDCNNGRTKWN-HVHTPAEFSGFPFS 208
             ++         KW+ HVH P +FS  PFS
Sbjct: 373 GVMMKMTTEKKMGKWSHHVHIPCDFSTLPFS 403


>AT1G80440.1 | Symbols:  | kelch repeat-containing F-box family
           protein | chr1:30241763-30242827 FORWARD
          Length = 354

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 1   DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
           +  K AL SA VYD+  ++W  LP+M  +RDEC  +   G  RF V+ GY T+ QGQF  
Sbjct: 174 NEEKCALTSAMVYDVSEDKWTFLPDMARERDECKAVFHAG--RFHVIGGYATEEQGQFSK 231

Query: 61  DAECYDPDNGVWHKIT 76
            AE +D     W  +T
Sbjct: 232 TAESFDVSTWEWGPLT 247


>AT1G15670.1 | Symbols:  | kelch repeat-containing F-box family
           protein | chr1:5390119-5391198 FORWARD
          Length = 359

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 1   DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
           D  KNA+ SA VYD+  + W  LP+M  +RDEC  +   G  +F V+ GY T+ QGQF  
Sbjct: 178 DEDKNAMMSALVYDVAEDRWAFLPDMGRERDECTAIFHAG--KFHVIGGYSTEEQGQFSK 235

Query: 61  DAECYD 66
            AE +D
Sbjct: 236 TAESFD 241


>AT5G60570.1 | Symbols:  | kelch repeat-containing F-box family
           protein | chr5:24348713-24349894 FORWARD
          Length = 393

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 1   DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
           D + N L SAE+YD     W +LPNM   R  C G  F  D +F+V+ G  + +     +
Sbjct: 199 DMNGNILASAELYDSSSGRWEMLPNMHSPRRLCSG--FFMDGKFYVIGGMSSPNVSV--T 254

Query: 61  DAECYDPDNGVWHKITGVWPFSSTSPRGATTIV 93
             E +D +   W KI G++P  + + +    +V
Sbjct: 255 FGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVV 287