Jatropha Genome Database

JcCB0340941.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0340941.20 - phase: 1 /partial
         (158 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12820.1 | Symbols: AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); au...   187   3e-48
AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRH1 (GRR1-LIKE PROT...   171   2e-43
AT3G62980.1 | Symbols: TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE...   167   2e-42
AT4G24390.1 | Symbols:  | F-box family protein (FBX14) | chr4:12...   164   2e-41
AT4G24390.2 | Symbols:  | F-box family protein (FBX14) | chr4:12...   164   2e-41
AT3G26810.1 | Symbols: AFB2 | AFB2 (AUXIN SIGNALING F-BOX 2); au...   160   3e-40
AT5G49980.1 | Symbols: AFB5 | AFB5 (Auxin F-Box protein 5); ubiq...   159   5e-40
AT2G39940.1 | Symbols: COI1 | COI1 (CORONATINE INSENSITIVE 1); p...    86   1e-17
AT1G47056.1 | Symbols: VFB1 | VFB1 (VIER F-BOX PROTEINE 1); ubiq...    53   6e-08

>AT1G12820.1 | Symbols: AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); auxin
           binding / ubiquitin-protein ligase |
           chr1:4368879-4370780 REVERSE
          Length = 577

 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/157 (58%), Positives = 115/157 (73%), Gaps = 9/157 (5%)

Query: 8   FGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVLGGCPKL 67
           FGA+V+ C  L+RLSVSGLLTD  F YIG YA+ LE LS+AFAG +D GM  VL GC K+
Sbjct: 421 FGAIVQACKGLRRLSVSGLLTDQVFLYIGMYAEQLEMLSIAFAGDTDKGMLYVLNGCKKM 480

Query: 68  RKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVEVMKE--- 124
           RKLEIRD PFGNAALL+ + +YE+MRSLWMSSC+VT+ GC+ LA+  PRLNVE++ E   
Sbjct: 481 RKLEIRDSPFGNAALLADVGRYETMRSLWMSSCEVTLGGCKRLAQNSPRLNVEIINENEN 540

Query: 125 ------EWSDDSQADKVYVYRSVAGPRRDAPPSVLTL 155
                 E  +  + DK+Y+YR+V G R+DAPP V  L
Sbjct: 541 NGMEQNEEDEREKVDKLYLYRTVVGTRKDAPPYVRIL 577


>AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRH1 (GRR1-LIKE PROTEIN
           1); auxin binding / protein binding / ubiquitin-protein
           ligase | chr4:1405108-1407057 REVERSE
          Length = 585

 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/158 (51%), Positives = 110/158 (69%), Gaps = 4/158 (2%)

Query: 2   NPWMRSFGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVL 61
            P  + F A+ + C  L+RLSVSGLL+D  F+YIG++AK +  LS+AFAG SD  +  +L
Sbjct: 414 EPLDKGFKAIAEGCRDLRRLSVSGLLSDKAFKYIGKHAKKVRMLSIAFAGDSDLMLHHLL 473

Query: 62  GGCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVEV 121
            GC  L+KLEIRDCPFG+ ALL    K E+MRSLWMSSC V+   C+LL+++MPRLNVEV
Sbjct: 474 SGCESLKKLEIRDCPFGDTALLEHAAKLETMRSLWMSSCFVSFGACKLLSQKMPRLNVEV 533

Query: 122 MKEE----WSDDSQADKVYVYRSVAGPRRDAPPSVLTL 155
           + E       + S  +++Y+YR+VAGPR D P  V T+
Sbjct: 534 IDEHPPESRPESSPVERIYIYRTVAGPRMDTPEFVWTI 571


>AT3G62980.1 | Symbols: TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE
           1); auxin binding / protein binding / ubiquitin-protein
           ligase | chr3:23273479-23276181 REVERSE
          Length = 594

 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/154 (58%), Positives = 112/154 (72%), Gaps = 5/154 (3%)

Query: 1   MNPWMRSFGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCV 60
           + P    FGA+V+ C  L+RLS+SGLLTD  FEYIG YAK +E LSVAFAG SD GM  V
Sbjct: 417 LEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV 476

Query: 61  LGGCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVE 120
           L GC  LRKLEIRDCPFG+ ALL+   K E+MRSLWMSSC V+   C+LL ++MP+LNVE
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE 536

Query: 121 VMKEEWSDDSQ-----ADKVYVYRSVAGPRRDAP 149
           V+ E  + DS+      ++V++YR+VAGPR D P
Sbjct: 537 VIDERGAPDSRPESCPVERVFIYRTVAGPRFDMP 570


>AT4G24390.1 | Symbols:  | F-box family protein (FBX14) |
           chr4:12613909-12615966 REVERSE
          Length = 623

 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 106/159 (66%), Gaps = 6/159 (3%)

Query: 3   PWMRSFGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVLG 62
           P    FGA+VK C KL RL+VSGLLTD  F YIG Y K + TLSVAFAG+SD  ++ VL 
Sbjct: 465 PMDDGFGAIVKNCKKLTRLAVSGLLTDEAFSYIGEYGKLIRTLSVAFAGNSDKALRYVLE 524

Query: 63  GCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVEVM 122
           GCPKL+KLEIRD PFG+  L SG+ +Y +MR +W+SSC ++  GCR ++  +P + VEV 
Sbjct: 525 GCPKLQKLEIRDSPFGDVGLRSGMHRYSNMRFVWLSSCLISRGGCRGVSHALPNVVVEVF 584

Query: 123 KEEWSDDSQA------DKVYVYRSVAGPRRDAPPSVLTL 155
             +  DD         + +Y+YRS+ GPR+DAP  V  L
Sbjct: 585 GADGDDDEDTVTGDYVETLYLYRSLDGPRKDAPKFVTIL 623


>AT4G24390.2 | Symbols:  | F-box family protein (FBX14) |
           chr4:12613909-12615966 REVERSE
          Length = 623

 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 106/159 (66%), Gaps = 6/159 (3%)

Query: 3   PWMRSFGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVLG 62
           P    FGA+VK C KL RL+VSGLLTD  F YIG Y K + TLSVAFAG+SD  ++ VL 
Sbjct: 465 PMDDGFGAIVKNCKKLTRLAVSGLLTDEAFSYIGEYGKLIRTLSVAFAGNSDKALRYVLE 524

Query: 63  GCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVEVM 122
           GCPKL+KLEIRD PFG+  L SG+ +Y +MR +W+SSC ++  GCR ++  +P + VEV 
Sbjct: 525 GCPKLQKLEIRDSPFGDVGLRSGMHRYSNMRFVWLSSCLISRGGCRGVSHALPNVVVEVF 584

Query: 123 KEEWSDDSQA------DKVYVYRSVAGPRRDAPPSVLTL 155
             +  DD         + +Y+YRS+ GPR+DAP  V  L
Sbjct: 585 GADGDDDEDTVTGDYVETLYLYRSLDGPRKDAPKFVTIL 623


>AT3G26810.1 | Symbols: AFB2 | AFB2 (AUXIN SIGNALING F-BOX 2); auxin
           binding / ubiquitin-protein ligase |
           chr3:9868342-9870464 FORWARD
          Length = 575

 Score =  160 bits (405), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/163 (54%), Positives = 113/163 (69%), Gaps = 9/163 (5%)

Query: 2   NPWMRSFGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVL 61
            P    FGA+VK C  L+RLS+SGLLTD  F YIG YA  LE LS+AFAG +D GM  VL
Sbjct: 413 QPLDEGFGAIVKACKSLRRLSLSGLLTDQVFLYIGMYANQLEMLSIAFAGDTDKGMLYVL 472

Query: 62  GGCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVEV 121
            GC K++KLEIRD PFG+ ALL+ + KYE+MRSLWMSSC+VT++GC+ LA + P LNVE+
Sbjct: 473 NGCKKMKKLEIRDSPFGDTALLADVSKYETMRSLWMSSCEVTLSGCKRLAEKAPWLNVEI 532

Query: 122 MKEEWSD---------DSQADKVYVYRSVAGPRRDAPPSVLTL 155
           + E  ++           + DK+Y+YR+V G R DAPP V  L
Sbjct: 533 INENDNNRMEENGHEGRQKVDKLYLYRTVVGTRMDAPPFVWIL 575


>AT5G49980.1 | Symbols: AFB5 | AFB5 (Auxin F-Box protein 5);
           ubiquitin-protein ligase | chr5:20334420-20336531
           REVERSE
          Length = 619

 Score =  159 bits (403), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 82/155 (52%), Positives = 108/155 (69%), Gaps = 2/155 (1%)

Query: 3   PWMRSFGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVLG 62
           P    FGA+VK C KL RL+VSGLLTD  F Y+G Y K + TLSVAFAG SD  ++ VL 
Sbjct: 465 PMDEGFGAIVKNCKKLTRLAVSGLLTDQAFRYMGEYGKLVRTLSVAFAGDSDMALRHVLE 524

Query: 63  GCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVEVM 122
           GCP+L+KLEIRD PFG+ AL SG+ +Y +MR +WMS+C ++   C+ +AR MP L VEV+
Sbjct: 525 GCPRLQKLEIRDSPFGDVALRSGMHRYYNMRFVWMSACSLSKGCCKDIARAMPNLVVEVI 584

Query: 123 KEEWSDDSQ--ADKVYVYRSVAGPRRDAPPSVLTL 155
             +  DD++   + +Y+YRS+ GPR DAP  V  L
Sbjct: 585 GSDDDDDNRDYVETLYMYRSLDGPRNDAPKFVTIL 619


>AT2G39940.1 | Symbols: COI1 | COI1 (CORONATINE INSENSITIVE 1);
           protein binding / ubiquitin-protein ligase |
           chr2:16672848-16675486 REVERSE
          Length = 592

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 13/154 (8%)

Query: 15  CNKLQRLSV---SGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVLGGCPKLRKLE 71
           C KL+R +     G LTDL   YIG+Y+ N+  + + + G SD G+     GCP L+KLE
Sbjct: 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494

Query: 72  IRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVEVM--------- 122
           +R C F   A+ + + K  S+R LW+   + +M G  L+    P  N+E++         
Sbjct: 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVN 554

Query: 123 -KEEWSDDSQADKVYVYRSVAGPRRDAPPSVLTL 155
            + E  +      +  Y S+AG R D P +V  L
Sbjct: 555 QQGEIREMEHPAHILAYYSLAGQRTDCPTTVRVL 588


>AT1G47056.1 | Symbols: VFB1 | VFB1 (VIER F-BOX PROTEINE 1);
           ubiquitin-protein ligase | chr1:17276103-17277659
           REVERSE
          Length = 518

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 10  AVVKTCNKLQRLSVSGL-LTDLTFEYIGRYAKNLETLSVAFAGSSDWG---MQCVLGGCP 65
           AV K C++LQ L + G+  T L+   +     NLE L  A  G   +G   + C+   CP
Sbjct: 331 AVAKFCSQLQELVLIGVNPTTLSLGMLAAKCLNLERL--ALCGCDTFGDPELSCIAAKCP 388

Query: 66  KLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCR---LLAREMPRLNVEVM 122
            LRKL I++CP  +  + +       +  + +  CK  + GC       R M  +N + M
Sbjct: 389 ALRKLCIKNCPISDVGIENLANGCPGLTKVKIKKCKGVLGGCADWLRTVRPMLSVNADTM 448

Query: 123 KEEWSDDSQADKV 135
           ++E  + +  D V
Sbjct: 449 EQEHEEAASNDVV 461