Jatropha Genome Database

JcCB0340941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0340941.10 + phase: 0 
         (105 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27360.1 | Symbols:  | dynein light chain, putative | chr4:13...   139   3e-34
AT3G16120.1 | Symbols:  | dynein light chain, putative | chr3:54...   104   1e-23
AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11 | ROPGEF11 (RHO GUAN...    96   4e-21
AT5G20110.1 | Symbols:  | dynein light chain, putative | chr5:67...    78   9e-16
AT1G23220.1 | Symbols:  | dynein light chain type 1 family prote...    77   3e-15
AT4G15930.1 | Symbols:  | microtubule motor | chr4:9036344-90378...    77   3e-15
AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11 | ROPGEF11 (RHO GUAN...    68   1e-12

>AT4G27360.1 | Symbols:  | dynein light chain, putative |
          chr4:13694032-13694517 FORWARD
          Length = 103

 Score =  139 bits (351), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 79/94 (84%)

Query: 1  MLEGKAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIV 60
          MLEGKAV+G+TDM QTM++DAL LA+KALD FDVTE T IARFIKK+FD   G GWQCIV
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GTEFGSFVTHYHGCFIYFNIGSIAIMLFRCAVNQ 94
          GT FGSFVTH  GCFI+F++GS+ I+LF+ +V +
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKGSVGE 94


>AT3G16120.1 | Symbols:  | dynein light chain, putative |
          chr3:5465035-5465395 FORWARD
          Length = 93

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 65/92 (70%)

Query: 1  MLEGKAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIV 60
          MLEGKA V ETDM   MQ  A+ +A+++LD+FDV +S  IA  IKK+FD   G GWQC+V
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GTEFGSFVTHYHGCFIYFNIGSIAIMLFRCAV 92
          GT FG F TH  G FIYF++G++  ++F+ A 
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGAT 92


>AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11 | ROPGEF11 (RHO
          GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11); Rho
          guanyl-nucleotide exchange factor |
          chr1:19458844-19459235 REVERSE
          Length = 94

 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 62/91 (68%)

Query: 1  MLEGKAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIV 60
          MLEGKA+V ++DM   MQ  A+  A++ALD+FDV +   IA  IKK+FD   G GWQC+V
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GTEFGSFVTHYHGCFIYFNIGSIAIMLFRCA 91
          G+ FG F TH  G FIYF + ++  ++F+ A
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGA 91


>AT5G20110.1 | Symbols:  | dynein light chain, putative |
           chr5:6791542-6793253 REVERSE
          Length = 209

 Score = 78.2 bits (191), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 48/81 (59%)

Query: 12  DMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIVGTEFGSFVTHY 71
           DM   MQ  A   A   LD  +   S  +A  +KK+FD   GP W CIVG+ FGSFVTH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  HGCFIYFNIGSIAIMLFRCAV 92
            GCFIYF++  + ++LF+  V
Sbjct: 183 TGCFIYFSMDKLYVLLFKTKV 203


>AT1G23220.1 | Symbols:  | dynein light chain type 1 family protein
           | chr1:8242614-8244136 FORWARD
          Length = 129

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 8   VGETDMLQTMQQDALHLAAKALDIFD-VTESTDIARFIKKDFDMLRGPGWQCIVGTEFGS 66
           V  +DM    Q  A  L+ + L+      ++  +A  +KKDFD   GP W CIVGT FGS
Sbjct: 38  VRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGS 97

Query: 67  FVTHYHGCFIYFNIGSIAIMLFRCAVNQVDE 97
           +VTH  G F+YF I  + ++LF+ AV  +D+
Sbjct: 98  YVTHSTGGFLYFQIDKVYVLLFKTAVEPLDQ 128


>AT4G15930.1 | Symbols:  | microtubule motor | chr4:9036344-9037825
           FORWARD
          Length = 123

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 5   KAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIVGTEF 64
           +AV+   DM   MQ++A+ +A  A + + V +  DIA  IKK+FD   G  W CIVG  F
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVEK--DIAENIKKEFDKKHGATWHCIVGRNF 96

Query: 65  GSFVTHYHGCFIYFNIGSIAIMLFRC 90
           GS+VTH    F+YF +   A++LF+ 
Sbjct: 97  GSYVTHETNHFVYFYLDQKAVLLFKS 122


>AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11 | ROPGEF11 (RHO
          GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11); Rho
          guanyl-nucleotide exchange factor |
          chr1:19455766-19459235 REVERSE
          Length = 607

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query: 1  MLEGKAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCI 59
          MLEGKA+V ++DM   MQ  A+  A++ALD+FDV +   IA  IKK+FD   G GWQC+
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCV 59