Jatropha Genome Database

JcCB0340161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0340161.10 - phase: 0 
         (89 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67500.1 | Symbols: ATREV3 | ATREV3 (ARABIDOPSIS THALIANA REC...   113   2e-26

>AT1G67500.1 | Symbols: ATREV3 | ATREV3 (ARABIDOPSIS THALIANA
          RECOVERY PROTEIN 3); DNA binding / DNA-directed DNA
          polymerase | chr1:25287707-25296714 REVERSE
          Length = 1890

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 58/66 (87%)

Query: 1  MANSRPDSKIFSVRIVSIDYYMAPPIPNTDICYSSFQGGKVNEVPVVRVYGSTPAGQKTC 60
          MA+S+  S +FS+RIVSIDYYMA PIP  +ICYSSFQG +VNEVPV+R+YGSTPAGQKTC
Sbjct: 1  MADSQSGSNVFSLRIVSIDYYMASPIPGYNICYSSFQGSEVNEVPVIRIYGSTPAGQKTC 60

Query: 61 LHIHRV 66
          LHIHR 
Sbjct: 61 LHIHRA 66