Jatropha Genome Database

JcCB0339681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0339681.10 + phase: 0 /partial
         (180 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41710.2 | Symbols:  | ovule development protein, putative | ...   118   2e-27
AT2G41710.1 | Symbols:  | ovule development protein, putative | ...   114   4e-26

>AT2G41710.2 | Symbols:  | ovule development protein, putative |
           chr2:17400274-17402903 REVERSE
          Length = 428

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 73/121 (60%), Gaps = 5/121 (4%)

Query: 40  FGERVVAFQEEISKYHGLSSQWDSSFSRMPGSEYFISINYGAADDLALENDYVGSLCFER 99
           FG +   F   I+KY GL S+WD+S SRMPG EYF +I+YGA DD   E D++GS C ER
Sbjct: 164 FGRKSSGFSRGIAKYRGLQSRWDASASRMPGPEYFSNIHYGAGDDRGTEGDFLGSFCLER 223

Query: 100 KIDLTSYIKWWGSNETRQXXXXXXXXXXXXHGYAEDVG-ELKTSEWAVQPTE-YQMPCLG 157
           KIDLT YIKWWG+N+ RQ                ED G ELKT E     TE Y+ P LG
Sbjct: 224 KIDLTGYIKWWGANKNRQPESSSKASEDAN---VEDAGTELKTLEHTSHATEPYKAPNLG 280

Query: 158 M 158
           +
Sbjct: 281 V 281


>AT2G41710.1 | Symbols:  | ovule development protein, putative |
           chr2:17400274-17402903 REVERSE
          Length = 423

 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 70/115 (60%), Gaps = 5/115 (4%)

Query: 46  AFQEEISKYHGLSSQWDSSFSRMPGSEYFISINYGAADDLALENDYVGSLCFERKIDLTS 105
            F   I+KY GL S+WD+S SRMPG EYF +I+YGA DD   E D++GS C ERKIDLT 
Sbjct: 165 GFSRGIAKYRGLQSRWDASASRMPGPEYFSNIHYGAGDDRGTEGDFLGSFCLERKIDLTG 224

Query: 106 YIKWWGSNETRQXXXXXXXXXXXXHGYAEDVG-ELKTSEWAVQPTE-YQMPCLGM 158
           YIKWWG+N+ RQ                ED G ELKT E     TE Y+ P LG+
Sbjct: 225 YIKWWGANKNRQ---PESSSKASEDANVEDAGTELKTLEHTSHATEPYKAPNLGV 276