Jatropha Genome Database

JcCB0338871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0338871.10 + phase: 0 /pseudo/partial
         (198 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24490.2 | Symbols:  | protein prenyltransferase | chr4:12655...   123   6e-29
AT4G24490.1 | Symbols:  | protein prenyltransferase | chr4:12655...   123   6e-29
AT5G41820.1 | Symbols:  | geranylgeranyl transferase alpha subun...   122   1e-28

>AT4G24490.2 | Symbols:  | protein prenyltransferase |
           chr4:12655330-12658103 REVERSE
          Length = 678

 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 92/142 (64%), Gaps = 7/142 (4%)

Query: 19  WQLKIIAE*VENFRELSDCKIGKLTLARLLTAHDSLMSCNEL--VHSEEVLRLYSDSMKL 76
           W+ + I   VE F  L D KIGKLTLARLL A ++++S + +  VH EE+L+LY+D M L
Sbjct: 414 WRQEAIDSEVECFGILPDSKIGKLTLARLLMAREAMVSDDAVKGVHYEEILQLYNDLMAL 473

Query: 77  DPSHSQYYKDKRCLVLFYLVFSGRESIVSRCFHYKDLTSPSHAYPMCLRLNKLSLSRIGS 136
           D SH QYYKD+      + V S  ES+      Y+D+ +      +CLRLN LSLSRI S
Sbjct: 474 DSSHYQYYKDEHSKAFLHKVTSSSESLSRHLLRYRDMNNL-----VCLRLNNLSLSRIAS 528

Query: 137 VEKLLWVQMPDLSQNELQSIEG 158
           VEKLL+VQM DLS NEL S EG
Sbjct: 529 VEKLLFVQMLDLSHNELHSTEG 550


>AT4G24490.1 | Symbols:  | protein prenyltransferase |
           chr4:12655330-12658103 REVERSE
          Length = 678

 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 92/142 (64%), Gaps = 7/142 (4%)

Query: 19  WQLKIIAE*VENFRELSDCKIGKLTLARLLTAHDSLMSCNEL--VHSEEVLRLYSDSMKL 76
           W+ + I   VE F  L D KIGKLTLARLL A ++++S + +  VH EE+L+LY+D M L
Sbjct: 414 WRQEAIDSEVECFGILPDSKIGKLTLARLLMAREAMVSDDAVKGVHYEEILQLYNDLMAL 473

Query: 77  DPSHSQYYKDKRCLVLFYLVFSGRESIVSRCFHYKDLTSPSHAYPMCLRLNKLSLSRIGS 136
           D SH QYYKD+      + V S  ES+      Y+D+ +      +CLRLN LSLSRI S
Sbjct: 474 DSSHYQYYKDEHSKAFLHKVTSSSESLSRHLLRYRDMNNL-----VCLRLNNLSLSRIAS 528

Query: 137 VEKLLWVQMPDLSQNELQSIEG 158
           VEKLL+VQM DLS NEL S EG
Sbjct: 529 VEKLLFVQMLDLSHNELHSTEG 550


>AT5G41820.1 | Symbols:  | geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related | chr5:16740804-16743433 FORWARD
          Length = 687

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 93/140 (66%), Gaps = 7/140 (5%)

Query: 19  WQLKIIAE*VENFRELSDCKIGKLTLARLLTAHDSLMSCNELVHSEEVLRLYSDSMKLDP 78
           W+ K I   +E FR L D KIGKL LARLL A ++++S    VH +E+L+LY+D M LD 
Sbjct: 431 WRKKAIKIEIELFRTLPDSKIGKLILARLLMAEETMISNG--VHYKEILQLYNDLMALDS 488

Query: 79  SHSQYYKDKRCLVLFYLVFSGRESIVSRCFHYKDLTSPSHAYPMCLRLNKLSLSRIGSVE 138
            H+QYYKD+  + L + V S  ES+    F Y+++ +      +CLRLN L+LSRI +VE
Sbjct: 489 WHNQYYKDEHSVALIHKVTSRTESMSRHLFRYRNMNNI-----ICLRLNNLTLSRIAAVE 543

Query: 139 KLLWVQMPDLSQNELQSIEG 158
           KLL+VQM DLS NEL S EG
Sbjct: 544 KLLFVQMLDLSHNELHSAEG 563