Jatropha Genome Database

JcCB0337131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0337131.10 - phase: 0 /partial
         (255 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65470.1 | Symbols: FAS1, NFB2 | FAS1 (FASCIATA 1); histone b...   244   4e-65

>AT1G65470.1 | Symbols: FAS1, NFB2 | FAS1 (FASCIATA 1); histone
           binding | chr1:24319906-24323879 REVERSE
          Length = 815

 Score =  244 bits (623), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 163/226 (72%), Gaps = 4/226 (1%)

Query: 1   GVQVDRMETELSVEKARGSPSSKQDSESEEFCKLLQQQKYLNNVTETALRKNQPLIILNL 60
           GVQVDRM+ + S + A  + SSKQD ES EFC LLQQQK+L N+T+ AL+K QPLII NL
Sbjct: 575 GVQVDRMDIDPSEQDA-NTTSSKQDQESPEFCALLQQQKHLQNLTDHALKKTQPLIICNL 633

Query: 61  MHEKVPLFVAEDLTGTSKLEWTCLEALRVRKFPGGPSMEISTVDIQAEAREAC-VSNGKT 119
            HEKV L  A+DL GT K+E  CL AL VR+FP    +EIS  DIQ E +EA   S  ++
Sbjct: 634 THEKVSLLAAKDLEGTQKVEQICLRALMVRQFPWSSLIEISINDIQDEDQEASKFSCSQS 693

Query: 120 NSTHVSPAAAIPELDMPIVVSTIQSCSQSINKVVDSLQQKFPTVSKSQLRNKVREISDFV 179
                S A  IP+ D+  VVSTIQSCSQ IN+VV++LQQKFP V K++LR KVREISDF 
Sbjct: 694 TPPSNSKAKIIPDSDLLTVVSTIQSCSQGINRVVETLQQKFPDVPKTKLRQKVREISDFE 753

Query: 180 DNRWQVKKEVLNEVGISISPPGKSRGRMPN-ISTFFSKRCLPPTGK 224
           D+RWQVKKEVL ++G+S SP  K   R+P  ISTFFSKRCLPP+ K
Sbjct: 754 DSRWQVKKEVLTKLGLSPSP-DKGGKRLPKTISTFFSKRCLPPSTK 798