Jatropha Genome Database

JcCB0334901.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0334901.20 - phase: 1 /partial
         (73 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14100.1 | Symbols:  | oligouridylate-binding protein, putati...    84   2e-17
AT1G17370.2 | Symbols: UBP1B | UBP1B (oligouridylate binding pro...    75   8e-15
AT1G17370.1 | Symbols: UBP1B | UBP1B (oligouridylate binding pro...    75   8e-15
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein, p...    66   4e-12
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein, p...    66   4e-12

>AT3G14100.1 | Symbols:  | oligouridylate-binding protein, putative
           | chr3:4673027-4675950 FORWARD
          Length = 427

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 50/68 (73%), Gaps = 1/68 (1%)

Query: 6   GLSATDLLTYERQLAMGKMGGVHALMHPQGQHALKQXXXXXXXXXXSQAIYDGGFQSVAA 65
           GLSA DLL YERQLA+ KM  V+ALMH QGQH L+Q          + A+YDGGFQ+VAA
Sbjct: 361 GLSAADLLNYERQLALSKMASVNALMHQQGQHPLRQAHGINAAGATA-AMYDGGFQNVAA 419

Query: 66  AQQLMYYQ 73
           AQQLMYYQ
Sbjct: 420 AQQLMYYQ 427


>AT1G17370.2 | Symbols: UBP1B | UBP1B (oligouridylate binding
           protein 1B); mRNA 3'-UTR binding | chr1:5951842-5954825
           REVERSE
          Length = 416

 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 49/69 (71%), Gaps = 6/69 (8%)

Query: 6   GLSATDLLTYERQLAMGKMGGVHALM-HPQGQHALKQXXXXXXXXXXSQAIYDGGFQSVA 64
           G SA+DLL YERQLAM KM G++ +M HPQGQHA KQ          +QAIYDGG+Q+  
Sbjct: 353 GFSASDLLAYERQLAMSKMAGMNPMMHHPQGQHAFKQ--AAMGATGSNQAIYDGGYQN-- 408

Query: 65  AAQQLMYYQ 73
            AQQLMYYQ
Sbjct: 409 -AQQLMYYQ 416


>AT1G17370.1 | Symbols: UBP1B | UBP1B (oligouridylate binding
           protein 1B); mRNA 3'-UTR binding | chr1:5951842-5954825
           REVERSE
          Length = 419

 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 49/69 (71%), Gaps = 6/69 (8%)

Query: 6   GLSATDLLTYERQLAMGKMGGVHALM-HPQGQHALKQXXXXXXXXXXSQAIYDGGFQSVA 64
           G SA+DLL YERQLAM KM G++ +M HPQGQHA KQ          +QAIYDGG+Q+  
Sbjct: 356 GFSASDLLAYERQLAMSKMAGMNPMMHHPQGQHAFKQ--AAMGATGSNQAIYDGGYQN-- 411

Query: 65  AAQQLMYYQ 73
            AQQLMYYQ
Sbjct: 412 -AQQLMYYQ 419


>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein,
           putative | chr1:20183923-20186824 REVERSE
          Length = 426

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 45/68 (66%), Gaps = 8/68 (11%)

Query: 7   LSATDLLTYERQLAMGKMGGVHALMHPQGQHALKQXXXXXXXXXXSQAIYDGGFQSVAAA 66
           LSA DLL YERQLA+ KM       HPQ QH+L+Q          + A+YDGG+Q+VAAA
Sbjct: 366 LSAMDLLAYERQLALAKM-------HPQAQHSLRQAGLGVNVAGGTAAMYDGGYQNVAAA 418

Query: 67  -QQLMYYQ 73
            QQLMYYQ
Sbjct: 419 HQQLMYYQ 426


>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein,
           putative | chr1:20183923-20186824 REVERSE
          Length = 430

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 45/68 (66%), Gaps = 8/68 (11%)

Query: 7   LSATDLLTYERQLAMGKMGGVHALMHPQGQHALKQXXXXXXXXXXSQAIYDGGFQSVAAA 66
           LSA DLL YERQLA+ KM       HPQ QH+L+Q          + A+YDGG+Q+VAAA
Sbjct: 370 LSAMDLLAYERQLALAKM-------HPQAQHSLRQAGLGVNVAGGTAAMYDGGYQNVAAA 422

Query: 67  -QQLMYYQ 73
            QQLMYYQ
Sbjct: 423 HQQLMYYQ 430