Jatropha Genome Database

JcCB0334901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0334901.10 + phase: 0 /pseudo/partial
         (209 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14110.2 | Symbols: FLU | FLU (FLUORESCENT IN BLUE LIGHT); bi...   225   2e-59
AT3G14110.1 | Symbols: FLU | FLU (FLUORESCENT IN BLUE LIGHT); bi...   224   3e-59

>AT3G14110.2 | Symbols: FLU | FLU (FLUORESCENT IN BLUE LIGHT);
           binding | chr3:4676222-4677010 REVERSE
          Length = 232

 Score =  225 bits (573), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 110/142 (77%), Positives = 126/142 (88%), Gaps = 2/142 (1%)

Query: 70  SSAPLLE--PVGSRIQDNEVIVDPRKQQLIARLKTGKNFLRNQDPEKALAEFKAALDLAQ 127
           S AP L   PVG+RI D+E+IV+P+KQ+LI++LKTGK FLRNQ+PEKA  EFK AL+LAQ
Sbjct: 91  SYAPSLSYAPVGARIPDSEIIVEPKKQELISKLKTGKTFLRNQEPEKAYTEFKIALELAQ 150

Query: 128 SMKDPIEEKKAARGLGASLQRQGKYQEAIKYHSMVLAISQRVGEDSGNTEAYGAIADCYT 187
           S+KDP EEKKAARGLGASLQRQGKY+EAI+YHSMVLAIS+R  EDSG TEAYGAIADCYT
Sbjct: 151 SLKDPTEEKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESEDSGITEAYGAIADCYT 210

Query: 188 EIGDLERAGKFYDQYIARLEKD 209
           E+GDLE+AGKFYD YIARLE D
Sbjct: 211 ELGDLEKAGKFYDTYIARLETD 232


>AT3G14110.1 | Symbols: FLU | FLU (FLUORESCENT IN BLUE LIGHT);
           binding | chr3:4676222-4677602 REVERSE
          Length = 316

 Score =  224 bits (571), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/142 (77%), Positives = 126/142 (88%), Gaps = 2/142 (1%)

Query: 70  SSAPLLE--PVGSRIQDNEVIVDPRKQQLIARLKTGKNFLRNQDPEKALAEFKAALDLAQ 127
           S AP L   PVG+RI D+E+IV+P+KQ+LI++LKTGK FLRNQ+PEKA  EFK AL+LAQ
Sbjct: 175 SYAPSLSYAPVGARIPDSEIIVEPKKQELISKLKTGKTFLRNQEPEKAYTEFKIALELAQ 234

Query: 128 SMKDPIEEKKAARGLGASLQRQGKYQEAIKYHSMVLAISQRVGEDSGNTEAYGAIADCYT 187
           S+KDP EEKKAARGLGASLQRQGKY+EAI+YHSMVLAIS+R  EDSG TEAYGAIADCYT
Sbjct: 235 SLKDPTEEKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESEDSGITEAYGAIADCYT 294

Query: 188 EIGDLERAGKFYDQYIARLEKD 209
           E+GDLE+AGKFYD YIARLE D
Sbjct: 295 ELGDLEKAGKFYDTYIARLETD 316