Jatropha Genome Database
- JcCB0329751.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0329751.10 - phase: 0 /pseudo
(163 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G18780.1 | Symbols: CESA8, IRX1, ATCESA8, LEW2 | IRX1 (IRREGU... 202 7e-53
AT4G32410.1 | Symbols: CESA1, RSW1 | CESA1 (CELLULOSE SYNTHASE 1... 65 2e-11
AT2G21770.1 | Symbols: CESA9, CESA09 | CESA9 (CELLULOSE SYNTHASE... 62 1e-10
AT2G25540.1 | Symbols: CESA10 | CESA10 (CELLULOSE SYNTHASE 10); ... 61 3e-10
AT5G17420.1 | Symbols: IRX3, CESA7, ATCESA7, MUR10 | IRX3 (IRREG... 60 5e-10
AT5G64740.1 | Symbols: CESA6, IXR2, E112, PRC1 | CESA6 (CELLULOS... 59 1e-09
AT5G09870.1 | Symbols: CESA5 | CESA5 (CELLULOSE SYNTHASE 5); cel... 59 1e-09
AT5G44030.1 | Symbols: CESA4, IRX5, NWS2 | CESA4 (CELLULOSE SYNT... 57 4e-09
AT4G39350.1 | Symbols: CESA2, ATH-A, ATCESA2 | CESA2 (CELLULOSE ... 57 6e-09
AT5G05170.1 | Symbols: CESA3, IXR1, ATCESA3, ATH-B, CEV1 | CEV1 ... 54 3e-08
>AT4G18780.1 | Symbols: CESA8, IRX1, ATCESA8, LEW2 | IRX1 (IRREGULAR
XYLEM 1); cellulose synthase/ transferase, transferring
glycosyl groups | chr4:10312846-10316719 REVERSE
Length = 985
Score = 202 bits (514), Expect = 7e-53, Method: Composition-based stats.
Identities = 83/121 (68%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 1 MMESGVPICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPYDE 60
MMES PIC+TCGE++G+ +NGE FVACH+C+FP+CK+C EYE KE R++CLRCG+PYDE
Sbjct: 1 MMESRSPICNTCGEEIGVKSNGEFFVACHECSFPICKACLEYEFKEGRRICLRCGNPYDE 60
Query: 61 NLLDDGEAKASGNRSTMASQLNN-SQDVGIHARHVSSVSTVDSEMNDEYGNPIWKNRVES 119
N+ DD E K S +S + +Q NN SQD GIHARH+S+VST+DSE+NDEYGNPIWKNRVES
Sbjct: 61 NVFDDVETKTSKTQSIVPTQTNNTSQDSGIHARHISTVSTIDSELNDEYGNPIWKNRVES 120
Query: 120 W 120
W
Sbjct: 121 W 121
>AT4G32410.1 | Symbols: CESA1, RSW1 | CESA1 (CELLULOSE SYNTHASE
1); cellulose synthase/ transferase, transferring
glycosyl groups | chr4:15641009-15646388 REVERSE
Length = 1081
Score = 64.7 bits (156), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 8 ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
IC CG+ VGL G+ FVAC++C FP+C+ C+EYE K+ + C +C + +
Sbjct: 38 ICQICGDDVGLAETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRF 88
>AT2G21770.1 | Symbols: CESA9, CESA09 | CESA9 (CELLULOSE SYNTHASE
A9); cellulose synthase/ transferase, transferring
glycosyl groups | chr2:9284837-9289495 FORWARD
Length = 1088
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 9 CHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
C C +++ L NGEPF+AC++C FP C+ C+EYE +E + C +CG+ Y
Sbjct: 39 CKICRDEIELTDNGEPFIACNECAFPTCRPCYEYERREGNQACPQCGTRY 88
>AT2G25540.1 | Symbols: CESA10 | CESA10 (CELLULOSE SYNTHASE 10);
cellulose synthase/ transferase, transferring glycosyl
groups | chr2:10867070-10872077 REVERSE
Length = 1065
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 8 ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
IC CG+ VGL G FVAC++C FP+C+SC+EYE K+ + C +C + +
Sbjct: 32 ICQICGDDVGLTKTGNVFVACNECGFPLCQSCYEYERKDGSQCCPQCKARF 82
>AT5G17420.1 | Symbols: IRX3, CESA7, ATCESA7, MUR10 | IRX3
(IRREGULAR XYLEM 3); cellulose synthase |
chr5:5736859-5741407 REVERSE
Length = 1026
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 8 ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
C CG+Q+GL G+ FVAC++C FP C+ C+EYE +E + C +C + Y
Sbjct: 36 FCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 86
>AT5G64740.1 | Symbols: CESA6, IXR2, E112, PRC1 | CESA6 (CELLULOSE
SYNTHASE 6); cellulose synthase/ transferase,
transferring glycosyl groups | chr5:25881555-25886333
FORWARD
Length = 1084
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 9 CHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
C C +++ L +GEPFVAC++C FP+C+ C+EYE +E + C +C + +
Sbjct: 39 CQICRDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRF 88
>AT5G09870.1 | Symbols: CESA5 | CESA5 (CELLULOSE SYNTHASE 5);
cellulose synthase/ transferase, transferring glycosyl
groups | chr5:3073356-3077974 FORWARD
Length = 1069
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 9 CHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
C CG+++ L +GE FVAC++C FP+C+ C+EYE +E + C +C + Y
Sbjct: 39 CQICGDEIELSVDGESFVACNECAFPVCRPCYEYERREGNQSCPQCKTRY 88
>AT5G44030.1 | Symbols: CESA4, IRX5, NWS2 | CESA4 (CELLULOSE
SYNTHASE A4); cellulose synthase/ transferase,
transferring glycosyl groups | chr5:17714713-17719564
FORWARD
Length = 1049
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 62/144 (43%), Gaps = 30/144 (20%)
Query: 8 ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY--------- 58
IC CG++V NG+ FVACH C +P+CK C+EYE K C +C + Y
Sbjct: 22 ICKVCGDEVKDDDNGQTFVACHVCVYPVCKPCYEYERSNGNKCCPQCNTLYKRHKGSPKI 81
Query: 59 ----DENLLDDGEAKASGNRSTMASQL-------------NNSQDVGIHARHVSSVSTV- 100
+ N DD + + + S + N+ Q + R SS +V
Sbjct: 82 AGDEENNGPDDSDDELNIKYRQDGSSIHQNFAYGSENGDYNSKQQWRPNGRAFSSTGSVL 141
Query: 101 --DSEM-NDEYGNPIWKNRVESWK 121
D E D Y + WK RV+ WK
Sbjct: 142 GKDFEAERDGYTDAEWKERVDKWK 165
>AT4G39350.1 | Symbols: CESA2, ATH-A, ATCESA2 | CESA2 (CELLULOSE
SYNTHASE A2); cellulose synthase/ transferase,
transferring glycosyl groups | chr4:18297078-18301890
FORWARD
Length = 1084
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 9 CHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
C CG+++ L + E FVAC++C FP+C+ C+EYE +E + C +C + Y
Sbjct: 39 CQICGDEIELTVSSELFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88
>AT5G05170.1 | Symbols: CESA3, IXR1, ATCESA3, ATH-B, CEV1 | CEV1
(CONSTITUTIVE EXPRESSION OF VSP 1); cellulose synthase/
transferase, transferring glycosyl groups |
chr5:1530401-1535090 REVERSE
Length = 1065
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 MESGVP-ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
M++ VP C C + VG +G+ FVAC C+FP+C+ C+EYE K+ + C +C + Y
Sbjct: 12 MKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQSCPQCKTRY 69