Jatropha Genome Database

JcCB0329631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0329631.10 + phase: 2 /pseudo/partial
         (249 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20330.1 | Symbols:  | aspartate carabmoyltransferase, chloro...   252   2e-67

>AT3G20330.1 | Symbols:  | aspartate carabmoyltransferase,
           chloroplast / aspartate transcarbamylase / ATCase (PYRB)
           | chr3:7090354-7091904 REVERSE
          Length = 390

 Score =  252 bits (644), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 117/139 (84%), Positives = 129/139 (92%)

Query: 111 SIQLSLAKYQDVKIYFVSPEVVKMKDDIKDYLTSKGVTWEESADLIEVASKCDVVYQTRI 170
           S+   LAK++DVKIYFVSPE+VKMKDDIKDYLTS GV WEES+DL+EVASKCDVVYQTRI
Sbjct: 252 SLAYLLAKFKDVKIYFVSPEIVKMKDDIKDYLTSSGVEWEESSDLMEVASKCDVVYQTRI 311

Query: 171 QRERFGERIDLYEEARGKYIVDRDVLNVMQKHAVVMHPLPRLDEITIDVDADPRGAYFRQ 230
           QRERFGER+DLYE ARGKYIVD+D+L VMQK A++MHPLPRLDEIT DVDADPR AYFRQ
Sbjct: 312 QRERFGERLDLYEAARGKYIVDKDLLGVMQKKAIIMHPLPRLDEITADVDADPRAAYFRQ 371

Query: 231 AKNGLYIRMALLKLLLVGW 249
           AKNGL+IRMALLKLLLVGW
Sbjct: 372 AKNGLFIRMALLKLLLVGW 390