Jatropha Genome Database

JcCB0320341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0320341.10 + phase: 0 
         (77 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35590.1 | Symbols:  | RWP-RK domain-containing protein | chr...    73   4e-14

>AT4G35590.1 | Symbols:  | RWP-RK domain-containing protein |
           chr4:16892909-16894865 FORWARD
          Length = 370

 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 53/65 (81%), Gaps = 1/65 (1%)

Query: 13  EAERQKQENENAAMAVAKRQKMLEKEKETIERKPFIEIQSETKRFRQDVFKRRHRA-RAL 71
           EAE+Q+++NE AAMAVAK+Q+ LE EK  I ++PF+EI  ETK+FRQ+ FK+RHRA RA 
Sbjct: 299 EAEKQQEKNEAAAMAVAKKQEKLETEKRNIVKRPFMEIGIETKKFRQENFKKRHRASRAK 358

Query: 72  RNQGS 76
           +NQ S
Sbjct: 359 KNQES 363