Jatropha Genome Database

JcCB0320291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0320291.10 - phase: 0 /partial
         (260 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58160.1 | Symbols:  | actin binding | chr5:23533724-23539465...   354   4e-98
AT2G25050.1 | Symbols:  | formin homology 2 domain-containing pr...   284   5e-77
AT1G31810.1 | Symbols:  | actin binding | chr1:11399922-11405761...   274   3e-74

>AT5G58160.1 | Symbols:  | actin binding | chr5:23533724-23539465
           FORWARD
          Length = 1324

 Score =  354 bits (908), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 164/260 (63%), Positives = 200/260 (76%), Gaps = 2/260 (0%)

Query: 1   MSLFRKLFYRKPPDGLLEICERVYVFDYCFTVDAWQEENYTSYMSGIVGQLKEHFPDASF 60
           M+LFRKLFYRKPPDGLLEIC+RV+VFD CF+ D+W+EENY  YM+G+V QL+EHFP+AS 
Sbjct: 1   MALFRKLFYRKPPDGLLEICDRVFVFDCCFSTDSWEEENYKVYMAGVVNQLQEHFPEASS 60

Query: 61  LVFNFREGEKQSQLSDIMSEYNMTIMEYPRQYEGCPLLRMEVIHHFLRSGESWLSLGVQN 120
           LVFNFRE   +S ++D++SE+ +TIM+YPR YEGC LL +EV+HHFLRS ESWLSLG  N
Sbjct: 61  LVFNFREVGTRSVMADVLSEHGLTIMDYPRHYEGCSLLPVEVMHHFLRSSESWLSLGPNN 120

Query: 121 LLLMHCERGGWPVLAFMLAALLLYRKQFSGEHKTLDMIYRXXXXXXXXXXXXXXXXXXXX 180
           LLLMHCE G WPVLAFMLAALL+YRKQ+SGE KTLDMIY+                    
Sbjct: 121 LLLMHCESGAWPVLAFMLAALLIYRKQYSGESKTLDMIYKQAPRELLRLFSPLNPIPSQL 180

Query: 181 RYLQYVSRRNVASEWPPLERALTLECIILRFIPDFDGEGGCRPVFRIYGHGLSYQTTNDV 240
           RYLQYVSRRN+ SEWPPL+RALT++C+ILRFIPD  G+GG RP+FRIYG    +   +D 
Sbjct: 181 RYLQYVSRRNLVSEWPPLDRALTMDCVILRFIPDVSGQGGFRPMFRIYGQDPFF--VDDK 238

Query: 241 CSTPRNSTPRKGETVRNYKQ 260
                 +TP+KG+ +R YKQ
Sbjct: 239 KPKLLYTTPKKGKHLRVYKQ 258


>AT2G25050.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr2:10654108-10659383 REVERSE
          Length = 1111

 Score =  284 bits (726), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 129/225 (57%), Positives = 165/225 (73%), Gaps = 2/225 (0%)

Query: 36  QEENYTSYMSGIVGQLKEHFPDASFLVFNFREGEKQSQLSDIMSEYNMTIMEYPRQYEGC 95
           ++E+Y  Y+S I+ QL+E FP ASF+VFNFR+G+ +S++  +++EY+MTIM+YPR YEGC
Sbjct: 3   EDEDYRVYVSRIMSQLREQFPGASFMVFNFRDGDSRSRMESVLTEYDMTIMDYPRHYEGC 62

Query: 96  PLLRMEVIHHFLRSGESWLSLGVQNLLLMHCERGGWPVLAFMLAALLLYRKQFSGEHKTL 155
           PLL ME +HHFL+S ESWL L  QN+LL HCE GGWP LAFMLA+LLLYRKQFSGEH+TL
Sbjct: 63  PLLTMETVHHFLKSAESWLLLSQQNILLSHCELGGWPTLAFMLASLLLYRKQFSGEHRTL 122

Query: 156 DMIYRXXXXXXXXXXXXXXXXXXXXRYLQYVSRRNVASEWPPLERALTLECIILRFIPDF 215
           +MIY+                    R+LQY+SRRNV S+WPPL++ALTL+C+ LR IPDF
Sbjct: 123 EMIYKQAPRELLQLMSPLNPLPSQLRFLQYISRRNVGSQWPPLDQALTLDCVNLRLIPDF 182

Query: 216 DGEGGCRPVFRIYGHGLSYQTTNDVCSTPRNSTPRKGETVRNYKQ 260
           DGEGGCRP+FRIYG        +D  S    S P++ + VR YKQ
Sbjct: 183 DGEGGCRPIFRIYGQDPFM--ASDRTSKVLFSMPKRSKAVRQYKQ 225


>AT1G31810.1 | Symbols:  | actin binding | chr1:11399922-11405761
           REVERSE
          Length = 1230

 Score =  274 bits (701), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 124/261 (47%), Positives = 181/261 (69%), Gaps = 3/261 (1%)

Query: 1   MSLFRKLFYRKPPDGLLEICERVYVFDYCFTVDAWQEENYTSYMSGIVGQLKEHFPDASF 60
           MSL  + FY++PPDGLLE  +RVYVFD CF  +   +  Y  ++  ++  L E FP++SF
Sbjct: 1   MSLLSRFFYKRPPDGLLEFADRVYVFDSCFCTEVLADSLYQIFLHEVINDLHEEFPESSF 60

Query: 61  LVFNFREGEKQSQLSDIMSEYNMTIMEYPRQYEGCPLLRMEVIHHFLRSGESWLSLGV-Q 119
           L FNFREGEK+S  ++ + EY++T++EYPRQYEGCP+L + +I HFLR  ESWL+ G  Q
Sbjct: 61  LAFNFREGEKKSVFAETLCEYDVTVLEYPRQYEGCPMLPLSLIQHFLRVCESWLARGNRQ 120

Query: 120 NLLLMHCERGGWPVLAFMLAALLLYRKQFSGEHKTLDMIYRXXXXXXXXXXXXXXXXXXX 179
           +++L+HCERGGWP+LAF+LA+ L++RK  SGE +TL++++R                   
Sbjct: 121 DVILLHCERGGWPLLAFILASFLIFRKVHSGERRTLEIVHREAPKGLLQLLSPLNPFPSQ 180

Query: 180 XRYLQYVSRRNVASEWPPLERALTLECIILRFIPDFDGEGGCRPVFRIYGHGLSYQTTND 239
            RYLQYV+RRN+ SEWPP ERAL+L+C+I+R IP+FD + GCRP+ RI+G   +Y + + 
Sbjct: 181 LRYLQYVARRNINSEWPPPERALSLDCVIIRGIPNFDSQHGCRPIIRIFGR--NYSSKSG 238

Query: 240 VCSTPRNSTPRKGETVRNYKQ 260
           + +    S   K + +R+Y+Q
Sbjct: 239 LSTEMVYSMSDKKKPLRHYRQ 259