Jatropha Genome Database

JcCB0319311.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0319311.30 - phase: 2 /TE
         (375 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20980.1 | Symbols:  | unknown protein | chr3:7355963-7357966...    60   2e-09
AT3G21000.1 | Symbols:  | unknown protein | chr3:7363921-7365138...    60   2e-09

>AT3G20980.1 | Symbols:  | unknown protein | chr3:7355963-7357966
           FORWARD
          Length = 405

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 7/124 (5%)

Query: 193 WLVDSGCTNHMTPNLVNFNSLDTNYSSKVRLGDG-----RLVDVKGKGDVIIQTPSGTKR 247
           WL+ S  +NHMTP++  F +LD +   KV+   G      +  V+G GDV   T  G K 
Sbjct: 269 WLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDKSETTVAMVEGIGDVTFITNEGNKT 328

Query: 248 VSDVLYVPKLNQSLFSVGQLLDKNYSLLFKDKI-CEISDPSGSKLFAVKM-KRRSFPLHL 305
           + +VLYVP +  +  SV QL    + +  + +  C + D +  K+F   M ++R F L  
Sbjct: 329 IKNVLYVPGIEGNALSVSQLKRNGFEVSMERRTGCFVWDRTTGKMFGKNMWEKRGFCLRF 388

Query: 306 RNFE 309
              E
Sbjct: 389 SVIE 392


>AT3G21000.1 | Symbols:  | unknown protein | chr3:7363921-7365138
           FORWARD
          Length = 405

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 191 ETWLVDSGCTNHMTPNLVNFNSLDTNYSSKVRLGDGRLVDVKGKGDVIIQTPSGTKR-VS 249
           + W++      +MTP +  F +LD  + + V   DG ++ V+GKGDV I+   G K+ + 
Sbjct: 278 DIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIR 337

Query: 250 DVLYVPKLNQSLFSVGQLLDKNYSL 274
           +V++VP LN+++ S G+++ K YS+
Sbjct: 338 NVIFVPGLNRNVLSFGKMVSKRYSI 362