Jatropha Genome Database
- JcCB0319311.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0319311.20 + phase: 0
(60 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38330.1 | Symbols: | MATE efflux family protein | chr2:1606... 63 5e-11
AT4G38380.1 | Symbols: | antiporter/ drug transporter | chr4:17... 62 8e-11
AT1G51340.1 | Symbols: | MATE efflux family protein | chr1:1903... 56 5e-09
AT1G51340.2 | Symbols: | MATE efflux family protein | chr1:1903... 55 6e-09
AT3G08040.2 | Symbols: FRD3, MAN1 | FRD3 (FERRIC REDUCTASE DEFEC... 55 7e-09
AT3G08040.1 | Symbols: FRD3, MAN1 | FRD3 (FERRIC REDUCTASE DEFEC... 55 7e-09
>AT2G38330.1 | Symbols: | MATE efflux family protein |
chr2:16064571-16067318 FORWARD
Length = 521
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 38/52 (73%)
Query: 1 MYLGSGIFLNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
+ LGS +++M I SPMRIPAE+FL+LRA GAP +V+ LA QG FRG +
Sbjct: 185 LSLGSDFLMDVMAIPFDSPMRIPAEQFLRLRAYGAPPIVVALAAQGAFRGFK 236
>AT4G38380.1 | Symbols: | antiporter/ drug transporter |
chr4:17971855-17974787 REVERSE
Length = 560
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 39/52 (75%)
Query: 1 MYLGSGIFLNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
+ L SG FL +MGI S S M IPA +FL LRA+GAPA V+ LA+QGIFRG +
Sbjct: 224 LSLASGPFLRLMGIQSMSEMFIPARQFLVLRALGAPAYVVSLALQGIFRGFK 275
>AT1G51340.1 | Symbols: | MATE efflux family protein |
chr1:19032034-19034681 FORWARD
Length = 509
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 9 LNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
L+ MG+ SPM P++R+L LR++GAPAV+L LA QG+FRG +
Sbjct: 187 LSFMGVKHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFK 230
>AT1G51340.2 | Symbols: | MATE efflux family protein |
chr1:19032021-19034681 FORWARD
Length = 515
Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 9 LNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
L+ MG+ SPM P++R+L LR++GAPAV+L LA QG+FRG +
Sbjct: 193 LSFMGVKHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFK 236
>AT3G08040.2 | Symbols: FRD3, MAN1 | FRD3 (FERRIC REDUCTASE
DEFECTIVE 3); antiporter/ transporter |
chr3:2566593-2569397 REVERSE
Length = 526
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 1 MYLGSGIFLNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
+ S + L +MG+ SPM PA ++L +RA+GAPA++L LA+QGIFRG +
Sbjct: 189 LIFSSKLLLGVMGVKPNSPMLSPAHKYLSIRALGAPALLLSLAMQGIFRGFK 240
>AT3G08040.1 | Symbols: FRD3, MAN1 | FRD3 (FERRIC REDUCTASE
DEFECTIVE 3); antiporter/ transporter |
chr3:2566593-2569397 REVERSE
Length = 526
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 1 MYLGSGIFLNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
+ S + L +MG+ SPM PA ++L +RA+GAPA++L LA+QGIFRG +
Sbjct: 189 LIFSSKLLLGVMGVKPNSPMLSPAHKYLSIRALGAPALLLSLAMQGIFRGFK 240