Jatropha Genome Database

JcCB0317901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0317901.10 - phase: 0 /partial
         (280 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75660.1 | Symbols: XRN3 | XRN3; 5'-3' exoribonuclease | chr1...   386   e-108
AT5G42540.1 | Symbols: XRN2 | XRN2 (EXORIBONUCLEASE 2); 5'-3' ex...   325   1e-89
AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | XRN4 (EXORIBON...   284   4e-77

>AT1G75660.1 | Symbols: XRN3 | XRN3; 5'-3' exoribonuclease |
           chr1:28408289-28414825 FORWARD
          Length = 1020

 Score =  386 bits (991), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/273 (69%), Positives = 214/273 (78%), Gaps = 7/273 (2%)

Query: 7   PVARFHGSRLASAPSLSPFQHSLESSSDGKGSFVWAKKVARTSSSASVGAAIVEAENSLE 66
           PVARF GSRLASAP+ SPFQ     S+DG+ +    +KV R S  +SVGAAIV+ ENSLE
Sbjct: 444 PVARFSGSRLASAPTPSPFQ-----SNDGRSA--PHQKVRRLSPGSSVGAAIVDVENSLE 496

Query: 67  IEAHXXXXXXXXXXXXXXXXXSDVFNSKNPEEDKVKLGEPGWKERYYEEKFYVKTLEELE 126
            +                   SD FNS   EEDKVKLG+PGW+ERYYEEKF V T EE+E
Sbjct: 497 SDERENKEELKTKLKELIREKSDAFNSDTTEEDKVKLGQPGWRERYYEEKFSVVTPEEME 556

Query: 127 DIRRDVALRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKNLDQMNIEFELGSPFK 186
            +R+DV L+YTEGLCWVMHYY EGVCSWQWFYPYHYAPFASDLK+L +M+I+FELG+PFK
Sbjct: 557 RVRKDVVLKYTEGLCWVMHYYMEGVCSWQWFYPYHYAPFASDLKDLGEMDIKFELGTPFK 616

Query: 187 PFNQLLGVFPAASSHALPVNYRKLMTDPNSPIIDFYPTDFEVDMNGKRYAWQGIAKLPFI 246
           PFNQLLGVFPAASSHALP  YR LMTDPNSPIIDFYPTDFEVDMNGKR++WQGIAKLPFI
Sbjct: 617 PFNQLLGVFPAASSHALPERYRTLMTDPNSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFI 676

Query: 247 DEARLLAEVKKIEHTLTEEEARRNSVMFDMLFV 279
           DE RLL  V ++E TLT+EE RRNS M DMLF+
Sbjct: 677 DERRLLEAVSEVEFTLTDEEKRRNSRMCDMLFI 709


>AT5G42540.1 | Symbols: XRN2 | XRN2 (EXORIBONUCLEASE 2); 5'-3'
           exonuclease/ 5'-3' exoribonuclease/ nucleic acid binding
           | chr5:17007513-17014534 FORWARD
          Length = 1012

 Score =  325 bits (834), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 156/272 (57%), Positives = 190/272 (69%), Gaps = 8/272 (2%)

Query: 9   ARFHGSRLASAPSLSPFQHSLESSSDGKGSFVWAKKVARTSSSASVGAAIVEAENSLEIE 68
           +R    +L    SL     SL SS         ++K  R S   ++G A VE ENSL+ E
Sbjct: 439 SRQFSGKLVQLDSLDEVSDSLHSSP--------SRKYLRLSLDDNIGVANVETENSLKAE 490

Query: 69  AHXXXXXXXXXXXXXXXXXSDVFNSKNPEEDKVKLGEPGWKERYYEEKFYVKTLEELEDI 128
                               D F S N E+DKVKL + GW+ERYYEEKF  K++EE+E I
Sbjct: 491 ELDNEEDLKFKLKKLLRDKGDGFRSGNGEQDKVKLNKVGWRERYYEEKFAAKSVEEMEQI 550

Query: 129 RRDVALRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKNLDQMNIEFELGSPFKPF 188
           RRDV L+YTEGLCW+MHYYY GVCSW WFYPYHYAPFASDLK L++++I+FELGSPFKPF
Sbjct: 551 RRDVVLKYTEGLCWIMHYYYHGVCSWNWFYPYHYAPFASDLKGLEKLDIKFELGSPFKPF 610

Query: 189 NQLLGVFPAASSHALPVNYRKLMTDPNSPIIDFYPTDFEVDMNGKRYAWQGIAKLPFIDE 248
           NQLL V P+AS+HALP  YR LMT+P+SPI DFYP DFE+DMNGKRY+WQGI+KLPF++E
Sbjct: 611 NQLLAVLPSASAHALPECYRSLMTNPDSPIADFYPADFEIDMNGKRYSWQGISKLPFVEE 670

Query: 249 ARLLAEVKKIEHTLTEEEARRNSVMFDMLFVL 280
            RLL    ++E +LT EE RRNS +FDMLFV+
Sbjct: 671 KRLLEAAAQVEKSLTNEEIRRNSALFDMLFVV 702


>AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | XRN4
           (EXORIBONUCLEASE 4); 5'-3' exonuclease/ 5'-3'
           exoribonuclease/ nucleic acid binding |
           chr1:20350300-20356650 FORWARD
          Length = 947

 Score =  284 bits (727), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 128/184 (69%), Positives = 151/184 (82%)

Query: 96  PEEDKVKLGEPGWKERYYEEKFYVKTLEELEDIRRDVALRYTEGLCWVMHYYYEGVCSWQ 155
           P +DK+KLGEPG+KERYY EKF     EE E I++D+ L+Y EGLCWV  YYY+GVCSWQ
Sbjct: 432 PIDDKIKLGEPGYKERYYAEKFSTTNPEETEQIKQDMVLKYVEGLCWVCRYYYQGVCSWQ 491

Query: 156 WFYPYHYAPFASDLKNLDQMNIEFELGSPFKPFNQLLGVFPAASSHALPVNYRKLMTDPN 215
           WFYPYHYAPFASDLKNL  + I F +G PFKPF+QL+G  PAASS+ALP  YRKLMTDP+
Sbjct: 492 WFYPYHYAPFASDLKNLPDLEITFFIGEPFKPFDQLMGTLPAASSNALPGEYRKLMTDPS 551

Query: 216 SPIIDFYPTDFEVDMNGKRYAWQGIAKLPFIDEARLLAEVKKIEHTLTEEEARRNSVMFD 275
           SPI+ FYP DFE+DMNGKR+AWQGIAKLPFI+E  LLA  +K+E TLT EE +RNSVM D
Sbjct: 552 SPILKFYPADFELDMNGKRFAWQGIAKLPFIEEKLLLAATRKLEETLTVEEQQRNSVMLD 611

Query: 276 MLFV 279
           +L+V
Sbjct: 612 LLYV 615