Jatropha Genome Database

JcCB0317451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0317451.20 - phase: 0 /partial
         (73 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55090.1 | Symbols:  | carbon-nitrogen hydrolase family prote...    82   5e-17

>AT1G55090.1 | Symbols:  | carbon-nitrogen hydrolase family protein
           | chr1:20554857-20558188 FORWARD
          Length = 725

 Score = 82.4 bits (202), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/49 (71%), Positives = 42/49 (85%)

Query: 1   RHKMTVLTPSYQAESYAPDDNRSDLRQFLYNTRWFRQFQKIDELASELD 49
           RHKMTVLTPSY AESY+P+DNR DLRQFLYN++W  QF+KIDE+   L+
Sbjct: 646 RHKMTVLTPSYHAESYSPEDNRFDLRQFLYNSKWPYQFKKIDEIVDSLN 694