Jatropha Genome Database

JcCB0317401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0317401.10 + phase: 0 
         (112 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18590.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   102   4e-23
AT3G52630.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    89   7e-19
AT3G52630.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    89   7e-19

>AT4G18590.1 | Symbols:  | FUNCTIONS IN: molecular_function
          unknown; INVOLVED IN: biological_process unknown;
          LOCATED IN: cellular_component unknown; EXPRESSED IN:
          23 plant structures; EXPRESSED DURING: 13 growth
          stages; CONTAINS InterPro DOMAIN/s: Replication factor
          A protein 3 (InterPro:IPR013970), Nucleic acid-binding,
          OB-fold-like (InterPro:IPR016027); BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT3G52630.2); Has 58 Blast hits to 58 proteins in
          25 species: Archae - 0; Bacteria - 0; Metazoa - 26;
          Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes -
          4 (source: NCBI BLink). | chr4:10236524-10236940
          FORWARD
          Length = 106

 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 69/95 (72%), Gaps = 2/95 (2%)

Query: 1  METSSPAIFVNGETLQMYTGKKVRAVVQVIECDGGNTIVKSTDEHEWIVKELPLPSVPLL 60
          M+TSSPA FVNG  L+ Y G+KVRAV+QVI  D G+ I KSTD+ + +VK  P P  PL 
Sbjct: 1  MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQP--PLT 58

Query: 61 NYIEVIGVAETNKSIRAELCTDFGNTFGMNYWPAL 95
           Y+EVIG+AET+ +IRAE+ T+FG++F +  +  L
Sbjct: 59 TYLEVIGIAETDNTIRAEVWTNFGDSFDVQNYNEL 93


>AT3G52630.2 | Symbols:  | FUNCTIONS IN: molecular_function
          unknown; INVOLVED IN: biological_process unknown;
          LOCATED IN: cellular_component unknown; CONTAINS
          InterPro DOMAIN/s: Replication factor A protein 3
          (InterPro:IPR013970), Nucleic acid-binding,
          OB-fold-like (InterPro:IPR016027); BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT4G18590.1); Has 58 Blast hits to 58 proteins in
          25 species: Archae - 0; Bacteria - 0; Metazoa - 28;
          Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes -
          4 (source: NCBI BLink). | chr3:19514184-19514596
          FORWARD
          Length = 107

 Score = 88.6 bits (218), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1  METSSPAIFVNGETLQMYTGKKVRAVVQVIECDGGNTIVKSTDEHEWIVKELPLPSVPLL 60
          M+TSSP+ FVNG  L+ + G+KVR V+QV   + G+ + KSTD+ + +V+    PS PL 
Sbjct: 1  MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPS-PLT 59

Query: 61 NYIEVIGVAETNKSIRAELCTDFGNTFGMNYWPAL 95
           Y+EVIG+AE++ +IRAE  T+FGNTF    +  L
Sbjct: 60 TYLEVIGIAESDNAIRAETWTNFGNTFDTQNYNEL 94


>AT3G52630.1 | Symbols:  | FUNCTIONS IN: molecular_function
          unknown; INVOLVED IN: biological_process unknown;
          LOCATED IN: cellular_component unknown; CONTAINS
          InterPro DOMAIN/s: Replication factor A protein 3
          (InterPro:IPR013970), Nucleic acid-binding,
          OB-fold-like (InterPro:IPR016027); BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT4G18590.1); Has 58 Blast hits to 58 proteins in
          25 species: Archae - 0; Bacteria - 0; Metazoa - 28;
          Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes -
          4 (source: NCBI BLink). | chr3:19514184-19514596
          FORWARD
          Length = 107

 Score = 88.6 bits (218), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1  METSSPAIFVNGETLQMYTGKKVRAVVQVIECDGGNTIVKSTDEHEWIVKELPLPSVPLL 60
          M+TSSP+ FVNG  L+ + G+KVR V+QV   + G+ + KSTD+ + +V+    PS PL 
Sbjct: 1  MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPS-PLT 59

Query: 61 NYIEVIGVAETNKSIRAELCTDFGNTFGMNYWPAL 95
           Y+EVIG+AE++ +IRAE  T+FGNTF    +  L
Sbjct: 60 TYLEVIGIAESDNAIRAETWTNFGNTFDTQNYNEL 94