Jatropha Genome Database

JcCB0316661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0316661.10 + phase: 0 /partial
         (55 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06540.1 | Symbols:  | GDP dissociation inhibitor family prot...    46   4e-06

>AT3G06540.1 | Symbols:  | GDP dissociation inhibitor family protein
           / Rab GTPase activator family protein |
           chr3:2035201-2037662 REVERSE
          Length = 563

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5   SISSTSMPDAKLDYGDVLDSAIKLFEKMYPNEEFFPETVSPEDS----ENDVGL 54
           +ISS   PD  L+Y ++++SA+KL+EK+  +EE F E  SP ++    END G+
Sbjct: 506 TISSMPSPDGNLNYNEIVESAVKLYEKLMGSEELFKEETSPAENTTEEENDGGV 559