Jatropha Genome Database
- JcCB0314321.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0314321.10 - phase: 2 /pseudo/partial
(276 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPON... 348 2e-96
AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 346 1e-95
AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23... 341 2e-94
AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 341 3e-94
AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 194 4e-50
AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 194 4e-50
AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS); transc... 179 2e-45
AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8); tr... 179 2e-45
AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTO... 178 3e-45
AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 139 2e-33
AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 139 2e-33
AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 139 2e-33
AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 125 3e-29
AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 125 3e-29
AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 124 5e-29
AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 124 5e-29
AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 124 5e-29
AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4); tr... 122 4e-28
AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);... 115 2e-26
AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 114 6e-26
AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 114 6e-26
AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 114 6e-26
AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);... 105 3e-23
AT2G33860.1 | Symbols: ETT, ARF3 | ETT (ETTIN); DNA binding / tr... 105 3e-23
AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);... 105 4e-23
AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);... 105 4e-23
AT1G34170.1 | Symbols: ARF13 | transcription factor | chr1:12444... 100 8e-22
AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);... 100 9e-22
AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);... 98 7e-21
AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);... 95 4e-20
AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);... 86 3e-17
AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);... 84 7e-17
AT1G34170.2 | Symbols: ARF13 | transcription factor | chr1:12444... 72 4e-13
AT1G34170.3 | Symbols: | transcription factor | chr1:12443578-1... 72 5e-13
AT1G77850.1 | Symbols: ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17);... 54 7e-08
>AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPONSE
FACTOR 19); DNA binding / transcription factor |
chr1:6628395-6632779 REVERSE
Length = 1086
Score = 348 bits (893), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 167/247 (67%), Positives = 190/247 (76%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L+LGIRRANRQ P L MHIGIL N+SPF +F+NPRASP+EFV+P
Sbjct: 219 QLMLGIRRANRQTPTLSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVP 278
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
+KYNKA+Y QVSLGMRFRMMFETE+ GVRRYMGT+TGISDLDPVRWK SQWRNLQVGWD
Sbjct: 279 LAKYNKALYAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWD 338
Query: 150 ESTAGERPSRVSIWEIEPVVTPFYICXXXXXXXXXXXXXGMPDDESDIENAFKRAMPWLG 209
ESTAG+RPSRVSIWEIEPV+TPFYIC GMPDDE D+ENAFKRAMPW+G
Sbjct: 339 ESTAGDRPSRVSIWEIEPVITPFYICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWMG 398
Query: 210 DDFGMKDSPSSIFPGLSLVQWMSMQQNNQFPAAQAGFFPPMLPSNALHNSLGSDDPSKIL 269
+DFGMKD+ SS+FPGLSLVQWMSMQQNN + P L S L N+ S+DPSK+L
Sbjct: 399 EDFGMKDAQSSMFPGLSLVQWMSMQQNNPLSGSATPQLPSALSSFNLPNNFASNDPSKLL 458
Query: 270 NFQAPGL 276
NFQ+P L
Sbjct: 459 NFQSPNL 465
>AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1164
Score = 346 bits (887), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 172/250 (68%), Positives = 196/250 (78%), Gaps = 5/250 (2%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+LLLGIRRANRQQPAL MHIG+L NNSPF +FYNPRA+PAEFV+P
Sbjct: 220 QLLLGIRRANRQQPALSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPRAAPAEFVVP 279
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
+KY KAMY QVSLGMRFRM+FETEE GVRRYMGT+TGISDLDPVRWKNSQWRNLQ+GWD
Sbjct: 280 LAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWD 339
Query: 150 ESTAGERPSRVSIWEIEPVVTPFYICXXXXXXXXXXXXXGMPDDESDIENAFKRAMPWLG 209
ES AG+RPSRVS+W+IEPV+TPFYIC GMPDDE+D+E+A KRAMPWL
Sbjct: 340 ESAAGDRPSRVSVWDIEPVLTPFYICPPPFFRPRFSGQPGMPDDETDMESALKRAMPWLD 399
Query: 210 DDFGMKDSPSSIFPGLSLVQWMSM-QQNNQFP--AAQAGFFPPML-PSNALHNSL-GSDD 264
+ MKD S+IFPGLSLVQWM+M QQN Q P AAQ GFFP ML P+ ALHN+L G+DD
Sbjct: 400 NSLEMKDPSSTIFPGLSLVQWMNMQQQNGQLPSAAAQPGFFPSMLSPTAALHNNLGGTDD 459
Query: 265 PSKILNFQAP 274
PSK+L+FQ P
Sbjct: 460 PSKLLSFQTP 469
>AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23,
IAA25 | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1150
Score = 341 bits (875), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 172/251 (68%), Positives = 196/251 (78%), Gaps = 6/251 (2%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPR-ASPAEFVI 88
+LLLGIRRANRQQPAL MHIG+L NNSPF +FYNPR A+PAEFV+
Sbjct: 220 QLLLGIRRANRQQPALSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPRWAAPAEFVV 279
Query: 89 PFSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGW 148
P +KY KAMY QVSLGMRFRM+FETEE GVRRYMGT+TGISDLDPVRWKNSQWRNLQ+GW
Sbjct: 280 PLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGW 339
Query: 149 DESTAGERPSRVSIWEIEPVVTPFYICXXXXXXXXXXXXXGMPDDESDIENAFKRAMPWL 208
DES AG+RPSRVS+W+IEPV+TPFYIC GMPDDE+D+E+A KRAMPWL
Sbjct: 340 DESAAGDRPSRVSVWDIEPVLTPFYICPPPFFRPRFSGQPGMPDDETDMESALKRAMPWL 399
Query: 209 GDDFGMKDSPSSIFPGLSLVQWMSM-QQNNQFP--AAQAGFFPPML-PSNALHNSL-GSD 263
+ MKD S+IFPGLSLVQWM+M QQN Q P AAQ GFFP ML P+ ALHN+L G+D
Sbjct: 400 DNSLEMKDPSSTIFPGLSLVQWMNMQQQNGQLPSAAAQPGFFPSMLSPTAALHNNLGGTD 459
Query: 264 DPSKILNFQAP 274
DPSK+L+FQ P
Sbjct: 460 DPSKLLSFQTP 470
>AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1165
Score = 341 bits (874), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 172/251 (68%), Positives = 196/251 (78%), Gaps = 6/251 (2%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPR-ASPAEFVI 88
+LLLGIRRANRQQPAL MHIG+L NNSPF +FYNPR A+PAEFV+
Sbjct: 220 QLLLGIRRANRQQPALSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPRWAAPAEFVV 279
Query: 89 PFSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGW 148
P +KY KAMY QVSLGMRFRM+FETEE GVRRYMGT+TGISDLDPVRWKNSQWRNLQ+GW
Sbjct: 280 PLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGW 339
Query: 149 DESTAGERPSRVSIWEIEPVVTPFYICXXXXXXXXXXXXXGMPDDESDIENAFKRAMPWL 208
DES AG+RPSRVS+W+IEPV+TPFYIC GMPDDE+D+E+A KRAMPWL
Sbjct: 340 DESAAGDRPSRVSVWDIEPVLTPFYICPPPFFRPRFSGQPGMPDDETDMESALKRAMPWL 399
Query: 209 GDDFGMKDSPSSIFPGLSLVQWMSM-QQNNQFP--AAQAGFFPPML-PSNALHNSL-GSD 263
+ MKD S+IFPGLSLVQWM+M QQN Q P AAQ GFFP ML P+ ALHN+L G+D
Sbjct: 400 DNSLEMKDPSSTIFPGLSLVQWMNMQQQNGQLPSAAAQPGFFPSMLSPTAALHNNLGGTD 459
Query: 264 DPSKILNFQAP 274
DPSK+L+FQ P
Sbjct: 460 DPSKLLSFQTP 470
>AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 933
Score = 194 bits (494), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/146 (64%), Positives = 110/146 (75%), Gaps = 2/146 (1%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+LLLGIRRANR Q + MH+G+L NS F +FYNPRASP+EFVIP
Sbjct: 220 QLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIP 279
Query: 90 FSKYNKAMY-TQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGW 148
+KY KA+Y T+VS+GMRFRM+FETEES VRRYMGTITGI DLDP RW NS WR+++VGW
Sbjct: 280 LAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVKVGW 339
Query: 149 DESTAGERPSRVSIWEIEPVVT-PFY 173
DESTAGER RVS+WEIEP+ T P Y
Sbjct: 340 DESTAGERQPRVSLWEIEPLTTFPMY 365
>AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 935
Score = 194 bits (494), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/146 (64%), Positives = 110/146 (75%), Gaps = 2/146 (1%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+LLLGIRRANR Q + MH+G+L NS F +FYNPRASP+EFVIP
Sbjct: 222 QLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIP 281
Query: 90 FSKYNKAMY-TQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGW 148
+KY KA+Y T+VS+GMRFRM+FETEES VRRYMGTITGI DLDP RW NS WR+++VGW
Sbjct: 282 LAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVKVGW 341
Query: 149 DESTAGERPSRVSIWEIEPVVT-PFY 173
DESTAGER RVS+WEIEP+ T P Y
Sbjct: 342 DESTAGERQPRVSLWEIEPLTTFPMY 367
>AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS);
transcription factor | chr1:6887353-6891182 FORWARD
Length = 902
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/138 (60%), Positives = 102/138 (73%), Gaps = 1/138 (0%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L++G+RRANRQQ AL MHIG+L N +PF +FYNPRA PAEFVIP
Sbjct: 251 QLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRACPAEFVIP 310
Query: 90 FSKYNKAMY-TQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGW 148
+KY KA+ +Q+S+GMRF MMFETE+SG RRYMGTI GISDLDP+RW S+WRNLQV W
Sbjct: 311 LAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEW 370
Query: 149 DESTAGERPSRVSIWEIE 166
DE ++P+RVS W+IE
Sbjct: 371 DEPGCNDKPTRVSPWDIE 388
>AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8);
transcription factor | chr5:14630151-14633916 FORWARD
Length = 773
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 106/146 (72%), Gaps = 2/146 (1%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L LGIR A R Q + MHIG+L NS F VF++PRAS +EFVI
Sbjct: 219 QLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQ 278
Query: 90 FSKYNKAMY-TQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGW 148
SKY KA++ T++S+GMRFRM+FETEES VRRYMGTITGISDLD VRW NS WR+++VGW
Sbjct: 279 LSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGW 338
Query: 149 DESTAGERPSRVSIWEIEPVVT-PFY 173
DESTAGER RVS+WEIEP+ T P Y
Sbjct: 339 DESTAGERQPRVSLWEIEPLTTFPMY 364
>AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTOR
8); transcription factor | chr5:14630151-14634106
FORWARD
Length = 811
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 106/146 (72%), Gaps = 2/146 (1%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L LGIR A R Q + MHIG+L NS F VF++PRAS +EFVI
Sbjct: 219 QLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQ 278
Query: 90 FSKYNKAMY-TQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGW 148
SKY KA++ T++S+GMRFRM+FETEES VRRYMGTITGISDLD VRW NS WR+++VGW
Sbjct: 279 LSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGW 338
Query: 149 DESTAGERPSRVSIWEIEPVVT-PFY 173
DESTAGER RVS+WEIEP+ T P Y
Sbjct: 339 DESTAGERQPRVSLWEIEPLTTFPMY 364
>AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 91/142 (64%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L +G+RRA RQQ + MH+G+L + F V+Y PR SP+EF++P
Sbjct: 257 ELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVP 316
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
F +Y +++ S+GMRF+M FE EE+ +R+ GTI GI + DP RW S+WR+L+V WD
Sbjct: 317 FDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWD 376
Query: 150 ESTAGERPSRVSIWEIEPVVTP 171
E+++ RP RVS W++EP + P
Sbjct: 377 ETSSIPRPDRVSPWKVEPALAP 398
>AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 91/142 (64%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L +G+RRA RQQ + MH+G+L + F V+Y PR SP+EF++P
Sbjct: 257 ELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVP 316
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
F +Y +++ S+GMRF+M FE EE+ +R+ GTI GI + DP RW S+WR+L+V WD
Sbjct: 317 FDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWD 376
Query: 150 ESTAGERPSRVSIWEIEPVVTP 171
E+++ RP RVS W++EP + P
Sbjct: 377 ETSSIPRPDRVSPWKVEPALAP 398
>AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 91/142 (64%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L +G+RRA RQQ + MH+G+L + F V+Y PR SP+EF++P
Sbjct: 257 ELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVP 316
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
F +Y +++ S+GMRF+M FE EE+ +R+ GTI GI + DP RW S+WR+L+V WD
Sbjct: 317 FDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWD 376
Query: 150 ESTAGERPSRVSIWEIEPVVTP 171
E+++ RP RVS W++EP + P
Sbjct: 377 ETSSIPRPDRVSPWKVEPALAP 398
>AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 638
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 87/140 (62%), Gaps = 3/140 (2%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L +G+RRAN QQ ++ MH+G+L + F V+Y PR S +F+I
Sbjct: 209 ELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTMFIVYYKPRTS--QFIIS 266
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
+KY +AM + S+GMRF+M FE E+S RRY GT+ G+ D P WK+S+WR L+V WD
Sbjct: 267 LNKYLEAMSNKFSVGMRFKMRFEGEDSPERRYSGTVIGVKDCSP-HWKDSKWRCLEVHWD 325
Query: 150 ESTAGERPSRVSIWEIEPVV 169
E + RP++VS WEIEP V
Sbjct: 326 EPASISRPNKVSPWEIEPFV 345
>AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 636
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 87/140 (62%), Gaps = 3/140 (2%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L +G+RRAN QQ ++ MH+G+L + F V+Y PR S +F+I
Sbjct: 209 ELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTMFIVYYKPRTS--QFIIS 266
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
+KY +AM + S+GMRF+M FE E+S RRY GT+ G+ D P WK+S+WR L+V WD
Sbjct: 267 LNKYLEAMSNKFSVGMRFKMRFEGEDSPERRYSGTVIGVKDCSP-HWKDSKWRCLEVHWD 325
Query: 150 ESTAGERPSRVSIWEIEPVV 169
E + RP++VS WEIEP V
Sbjct: 326 EPASISRPNKVSPWEIEPFV 345
>AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 87/140 (62%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L +G+RR RQQ + MHIG+L + F+VFY PR S +EF++
Sbjct: 217 ELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAITTGTIFSVFYKPRTSRSEFIVS 276
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
++Y +A ++S+GMRF+M FE EE+ +R+ GTI G+ + W +S+WR+L+V WD
Sbjct: 277 VNRYLEAKTQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRSLKVQWD 336
Query: 150 ESTAGERPSRVSIWEIEPVV 169
E ++ RP RVS WE+EP+V
Sbjct: 337 EPSSVFRPERVSPWELEPLV 356
>AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 87/140 (62%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L +G+RR RQQ + MHIG+L + F+VFY PR S +EF++
Sbjct: 217 ELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAITTGTIFSVFYKPRTSRSEFIVS 276
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
++Y +A ++S+GMRF+M FE EE+ +R+ GTI G+ + W +S+WR+L+V WD
Sbjct: 277 VNRYLEAKTQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRSLKVQWD 336
Query: 150 ESTAGERPSRVSIWEIEPVV 169
E ++ RP RVS WE+EP+V
Sbjct: 337 EPSSVFRPERVSPWELEPLV 356
>AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 662
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 87/140 (62%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L +G+RR RQQ + MHIG+L + F+VFY PR S +EF++
Sbjct: 217 ELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAITTGTIFSVFYKPRTSRSEFIVS 276
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
++Y +A ++S+GMRF+M FE EE+ +R+ GTI G+ + W +S+WR+L+V WD
Sbjct: 277 VNRYLEAKTQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRSLKVQWD 336
Query: 150 ESTAGERPSRVSIWEIEPVV 169
E ++ RP RVS WE+EP+V
Sbjct: 337 EPSSVFRPERVSPWELEPLV 356
>AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4);
transcription factor | chr5:24308558-24312187 REVERSE
Length = 788
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L LGIRRA R + L IL S F VFY+PRA+ AEFVIP
Sbjct: 270 ELRLGIRRAARPRNGLPDSIIEKNSCS-NILSLVANAVSTKSMFHVFYSPRATHAEFVIP 328
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
+ KY ++ + V +G RFRM FE ++S RR G +TG+ DLDP RW NS+WR L V WD
Sbjct: 329 YEKYITSIRSPVCIGTRFRMRFEMDDSPERRCAGVVTGVCDLDPYRWPNSKWRCLLVRWD 388
Query: 150 ESTAGERPSRVSIWEIEPVVT 170
ES + RVS WEI+P V+
Sbjct: 389 ESFVSDHQERVSPWEIDPSVS 409
>AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);
transcription factor | chr3:22888171-22891179 FORWARD
Length = 602
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 31 LLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIPF 90
L +G+RR R Q + MH+G+L + F VFY PR S +F++
Sbjct: 222 LRVGVRRLARHQSTMPTSVISSQSMHLGVLATASHAVRTTTIFVVFYKPRIS--QFIVGV 279
Query: 91 SKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDE 150
+KY +A+ SLG RFRM FE EES R + GTI G DL +W S+WR+LQV WDE
Sbjct: 280 NKYMEAIKHGFSLGTRFRMRFEGEESPERIFTGTIVGSGDLSS-QWPASKWRSLQVQWDE 338
Query: 151 STAGERPSRVSIWEIEP 167
T +RP +VS WEIEP
Sbjct: 339 PTTVQRPDKVSPWEIEP 355
>AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105112-19108029 FORWARD
Length = 622
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 31 LLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIPF 90
L +G+RR +QQ + M +G+L + F VFY PR S +F+I
Sbjct: 239 LRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRIS--QFIISV 296
Query: 91 SKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDE 150
+KY AM SLGMR+RM FE EES R + GTI G DL +W S+WR+LQ+ WDE
Sbjct: 297 NKYMMAMKNGFSLGMRYRMRFEGEESPERIFTGTIIGSGDLSS-QWPASKWRSLQIQWDE 355
Query: 151 STAGERPSRVSIWEIEP 167
++ +RP++VS WEIEP
Sbjct: 356 PSSIQRPNKVSPWEIEP 372
>AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19104993-19108029 FORWARD
Length = 601
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 31 LLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIPF 90
L +G+RR +QQ + M +G+L + F VFY PR S +F+I
Sbjct: 218 LRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRIS--QFIISV 275
Query: 91 SKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDE 150
+KY AM SLGMR+RM FE EES R + GTI G DL +W S+WR+LQ+ WDE
Sbjct: 276 NKYMMAMKNGFSLGMRYRMRFEGEESPERIFTGTIIGSGDLSS-QWPASKWRSLQIQWDE 334
Query: 151 STAGERPSRVSIWEIEP 167
++ +RP++VS WEIEP
Sbjct: 335 PSSIQRPNKVSPWEIEP 351
>AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105511-19108029 FORWARD
Length = 514
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 31 LLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIPF 90
L +G+RR +QQ + M +G+L + F VFY PR S +F+I
Sbjct: 131 LRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRIS--QFIISV 188
Query: 91 SKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDE 150
+KY AM SLGMR+RM FE EES R + GTI G DL +W S+WR+LQ+ WDE
Sbjct: 189 NKYMMAMKNGFSLGMRYRMRFEGEESPERIFTGTIIGSGDLSS-QWPASKWRSLQIQWDE 247
Query: 151 STAGERPSRVSIWEIEP 167
++ +RP++VS WEIEP
Sbjct: 248 PSSIQRPNKVSPWEIEP 264
>AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);
transcription factor | chr1:12577722-12580824 FORWARD
Length = 606
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 80/140 (57%), Gaps = 3/140 (2%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L +GIRRA QQ + M G++ N F V Y PR+S +F++
Sbjct: 219 ELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHAFDNQCIFIVVYKPRSS--QFIVS 276
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
+ K+ A+ + ++G RF M FE ++ RRY GTI G+SD P WK S+WR+L+V WD
Sbjct: 277 YDKFLDAVNNKFNVGSRFTMRFEGDDFSERRYFGTIIGVSDFSP-HWKCSEWRSLEVQWD 335
Query: 150 ESTAGERPSRVSIWEIEPVV 169
E + RP++VS WEIE +V
Sbjct: 336 EFASFSRPNKVSPWEIEHLV 355
>AT2G33860.1 | Symbols: ETT, ARF3 | ETT (ETTIN); DNA binding /
transcription factor | chr2:14325444-14328613 REVERSE
Length = 608
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 77/138 (55%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
KL LG+RRA++ + M+ +S F++ YNP+AS + F+IP
Sbjct: 252 KLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPKASWSNFIIP 311
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
K+ K + +GMRF+ E+E++ RR G I+GISDLDP+RW S+WR L V WD
Sbjct: 312 APKFLKVVDYPFCIGMRFKARVESEDASERRSPGIISGISDLDPIRWPGSKWRCLLVRWD 371
Query: 150 ESTAGERPSRVSIWEIEP 167
+ A RVS WEIEP
Sbjct: 372 DIVANGHQQRVSPWEIEP 389
>AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);
transcription factor | chr1:12556005-12559082 FORWARD
Length = 598
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L +GIRRA QQ + M G++ N F V Y PR+S +F++
Sbjct: 217 ELRVGIRRAGHQQGNIPSSIISIESMRHGVIASAKHAFDNQCMFIVVYKPRSS--QFIVS 274
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
+ K+ A+ + ++G RF M FE ++ RRY GTI G+SD P WK S+WRNL+V WD
Sbjct: 275 YDKFLDAVNNKFNVGSRFTMRFEGDDFSERRYFGTIIGVSDFSP-HWKCSEWRNLEVQWD 333
Query: 150 ESTAGERPSRVSIWEIE 166
E + RP++VS WEIE
Sbjct: 334 EFASFSRPNKVSPWEIE 350
>AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);
transcription factor | chr1:12927457-12930523 REVERSE
Length = 590
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 79/145 (54%), Gaps = 1/145 (0%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L +GIRRA QQ + M G++ N F V Y P ++F++
Sbjct: 215 ELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHALDNQCIFIVVYKPSIRSSQFIVS 274
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
+ K+ AM + +G RF M FE ++ RRY GTI G++D P WK S+WR+L+V WD
Sbjct: 275 YDKFLDAMNNKFIVGSRFTMRFEGDDFSERRYFGTIIGVNDFSP-HWKCSEWRSLEVQWD 333
Query: 150 ESTAGERPSRVSIWEIEPVVTPFYI 174
E + RP++VS WEIE +++ +
Sbjct: 334 EFASFSRPNKVSPWEIEHLMSALNV 358
>AT1G34170.1 | Symbols: ARF13 | transcription factor |
chr1:12444265-12446764 REVERSE
Length = 505
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 3/140 (2%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L GIRRA QQ + M G++ F V Y P +S +FVI
Sbjct: 219 ELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFKTKCMFNVVYKPSSS--QFVIS 276
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
+ K+ AM +G RFRM FE ++ +RY GTI G++D+ P WK+S+WR+L+V WD
Sbjct: 277 YDKFVDAMNNNYIVGSRFRMQFEGKDFSEKRYDGTIIGVNDMSP-HWKDSEWRSLKVQWD 335
Query: 150 ESTAGERPSRVSIWEIEPVV 169
E + RP++VS W+IE ++
Sbjct: 336 ELSPFLRPNQVSPWDIEHLI 355
>AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);
transcription factor | chr1:13082819-13085830 REVERSE
Length = 598
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L +GIRRA QQ + M G++ N F V Y PR+S +F++
Sbjct: 224 ELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHAFDNQCMFIVVYKPRSS--QFIVS 281
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
+ K+ A+ + ++G RF M FE ++ RRY GTI G+S+ P WK S WR+L+V WD
Sbjct: 282 YDKFLDAVNNKFNVGSRFTMRFEGDDLSERRYFGTIIGVSNFSP-HWKCSDWRSLEVQWD 340
Query: 150 ESTAGERPSRVSIWEIE 166
E + RP++VS WEIE
Sbjct: 341 EFASFLRPNKVSPWEIE 357
>AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);
transcription factor | chr1:13108634-13111700 FORWARD
Length = 605
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L +GIRRA QQ + M GI+ N F V Y PR+S +F++
Sbjct: 219 ELRVGIRRAGHQQGNIPSSIVSIESMRHGIIASAKHAFDNQCMFIVVYKPRSS--QFIVS 276
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
+ K+ + + ++G RF M FE ++ RR GTI G+SD P WK S+WR+L+V WD
Sbjct: 277 YDKFLDVVNNKFNVGSRFTMRFEGDDFSERRSFGTIIGVSDFSP-HWKCSEWRSLEVQWD 335
Query: 150 ESTAGERPSRVSIWEIE 166
E + RP++VS W+IE
Sbjct: 336 EFASFPRPNQVSPWDIE 352
>AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);
transcription factor | chr1:12508548-12511520 REVERSE
Length = 593
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 3/137 (2%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L +GIRRA QQ + M G++ N F V Y PR+S +F++
Sbjct: 219 ELRVGIRRARHQQGNIPSSIVSIDCMRHGVVASAKHAFDNQCMFTVVYKPRSS--KFIVS 276
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
+ K+ A+ + ++G RF M E ++ RR GTI G+SD P WK S+WR+L+V WD
Sbjct: 277 YDKFLDAVNNKFNVGSRFTMRLEGDDFSERRCFGTIIGVSDFSP-HWKCSEWRSLEVQWD 335
Query: 150 ESTAGERPSRVSIWEIE 166
E T+ P +VS W+IE
Sbjct: 336 EFTSFPGPKKVSPWDIE 352
>AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);
miRNA binding / transcription factor |
chr2:12114331-12116665 FORWARD
Length = 693
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 73 FAVFYNPRASPAEFVIPFSKYNKAMYTQVSLGMRFRMMFETEESG-VRRYMGTITGISDL 131
F V Y PRAS EF + + AM + GMRF+M FETE+S + +MGT++ +
Sbjct: 287 FEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWFMGTVSAVQVA 346
Query: 132 DPVRWKNSQWRNLQVGWDESTAGERPSRVSIWEIEPV 168
DP+RW NS WR LQV WDE + RVS W +E V
Sbjct: 347 DPIRWPNSPWRLLQVAWDEPDLLQNVKRVSPWLVELV 383
>AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);
miRNA binding / transcription factor |
chr4:14703369-14705564 REVERSE
Length = 670
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 72 PFAVFYNPRASPAEFVIPFSKYNKAMYTQVSLGMRFRMMFETEESG-VRRYMGTITGISD 130
PF V Y PRAS +EF + AM GMRF+M FETE+S + +MGT++ ++
Sbjct: 288 PFEVVYYPRASTSEFCVKALDARAAMRIPWCSGMRFKMAFETEDSSRISWFMGTVSAVNV 347
Query: 131 LDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWEIEPV 168
DP+RW NS WR LQV WDE + RV+ W +E V
Sbjct: 348 SDPIRWPNSPWRLLQVAWDEPDLLQNVKRVNPWLVELV 385
>AT1G34170.2 | Symbols: ARF13 | transcription factor |
chr1:12444265-12446764 REVERSE
Length = 479
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 29/140 (20%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L GIRRA QQ + M G++ F V Y PR
Sbjct: 219 ELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFKTKCMFNVVYKPR--------- 269
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
M FE ++ +RY GTI G++D+ P WK+S+WR+L+V WD
Sbjct: 270 -------------------MQFEGKDFSEKRYDGTIIGVNDMSP-HWKDSEWRSLKVQWD 309
Query: 150 ESTAGERPSRVSIWEIEPVV 169
E + RP++VS W+IE ++
Sbjct: 310 ELSPFLRPNQVSPWDIEHLI 329
>AT1G34170.3 | Symbols: | transcription factor |
chr1:12443578-12446764 REVERSE
Length = 546
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 29/140 (20%)
Query: 30 KLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSPFAVFYNPRASPAEFVIP 89
+L GIRRA QQ + M G++ F V Y PR
Sbjct: 219 ELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFKTKCMFNVVYKPR--------- 269
Query: 90 FSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 149
M FE ++ +RY GTI G++D+ P WK+S+WR+L+V WD
Sbjct: 270 -------------------MQFEGKDFSEKRYDGTIIGVNDMSP-HWKDSEWRSLKVQWD 309
Query: 150 ESTAGERPSRVSIWEIEPVV 169
E + RP++VS W+IE ++
Sbjct: 310 ELSPFLRPNQVSPWDIEHLI 329
>AT1G77850.1 | Symbols: ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17);
transcription factor | chr1:29272405-29275193 FORWARD
Length = 585
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 72 PFAVFYNPRASPAEFVIPFSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDL 131
PF V + P A +EFV+ +M + G R +M ETE+S + I +
Sbjct: 283 PFEVVFYPAAGWSEFVVRAEDVESSMSMYWTPGTRVKMAMETEDSSRITWFQGIVSSTYQ 342
Query: 132 DPVRWKNSQWRNLQVGWDESTAGERPSRVSIWEIE 166
+ W+ S W+ LQ+ WDE + RV+ W++E
Sbjct: 343 ETGPWRGSPWKQLQITWDEPEILQNVKRVNPWQVE 377