Jatropha Genome Database

JcCB0313501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0313501.20 - phase: 1 /TE/partial
         (484 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...   105   7e-23
ATMG00820.1 | Symbols: ORF170 | hypothetical protein | chrM:2285...    74   3e-13

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 89/145 (61%), Gaps = 4/145 (2%)

Query: 74  AAMXEELRMINKNETWFLTYRPNDRKVIGVKWIYRLKLNLDGIIFKHKARLVVKGYAQLL 133
            AM +E+  +    TW +   P ++K IG KW+Y++K N DG I ++KARLV KGY Q  
Sbjct: 100 GAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQE 159

Query: 134 VIEYGDTFAPIARHDTVRLLITFAAXIKWNVYHFDVKSAFTNGFLEEEIFIEXAKGFLIA 193
            I++ +TF+P+ +  +V+L++  +A   + ++  D+ +AF NG L+EEI+++   G+   
Sbjct: 160 GIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAAR 219

Query: 194 GCE----DKVYKLSKALYGLKQAPK 214
             +    + V  L K++YGLKQA +
Sbjct: 220 QGDSLPPNAVCYLKKSIYGLKQASR 244


>ATMG00820.1 | Symbols: ORF170 | hypothetical protein |
           chrM:228573-229085 REVERSE
          Length = 170

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 58/92 (63%)

Query: 66  ALTNEAXVAAMXEELRMINKNETWFLTYRPNDRKVIGVKWIYRLKLNLDGIIFKHKARLV 125
           AL +     AM EEL  +++N+TW L   P ++ ++G KW+++ KL+ DG + + KARLV
Sbjct: 34  ALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLV 93

Query: 126 VKGYAQLLVIEYGDTFAPIARHDTVRLLITFA 157
            KG+ Q   I + +T++P+ R  T+R ++  A
Sbjct: 94  AKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125