Jatropha Genome Database

JcCB0309941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0309941.10 + phase: 0 
         (151 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12780.1 | Symbols: PGK1 | PGK1 (PHOSPHOGLYCERATE KINASE 1); ...   146   5e-36
AT1G56190.1 | Symbols:  | phosphoglycerate kinase, putative | ch...   144   2e-35
AT1G56190.2 | Symbols:  | phosphoglycerate kinase, putative | ch...   120   3e-28
AT1G79550.2 | Symbols: PGK | PGK (PHOSPHOGLYCERATE KINASE); phos...   100   5e-22
AT1G79550.1 | Symbols: PGK | PGK (PHOSPHOGLYCERATE KINASE); phos...   100   5e-22

>AT3G12780.1 | Symbols: PGK1 | PGK1 (PHOSPHOGLYCERATE KINASE 1);
           phosphoglycerate kinase | chr3:4061127-4063140 REVERSE
          Length = 481

 Score =  146 bits (368), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/87 (85%), Positives = 78/87 (89%), Gaps = 1/87 (1%)

Query: 60  FSHHVASKIRSFGFGKASRAVVSMAKKSVGDLTGADLKGKRVFVRADLNVPLDDNQNITD 119
           FS HVASK+ S   GK SR VVSMAKKSVGDLT ADLKGK+VFVRADLNVPLDDNQ ITD
Sbjct: 55  FSLHVASKVESV-RGKGSRGVVSMAKKSVGDLTSADLKGKKVFVRADLNVPLDDNQTITD 113

Query: 120 DTRIRAAIPTIKHLIQNGAKVILSTHL 146
           DTRIRAAIPTIK+LI+NGAKVILSTHL
Sbjct: 114 DTRIRAAIPTIKYLIENGAKVILSTHL 140


>AT1G56190.1 | Symbols:  | phosphoglycerate kinase, putative |
           chr1:21028403-21030454 FORWARD
          Length = 478

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/98 (77%), Positives = 82/98 (83%), Gaps = 2/98 (2%)

Query: 50  RLGF-APADPLFSHHVASKIRSFGFGKASRAVVSMAKKSVGDLTGADLKGKRVFVRADLN 108
           RLGF A  D  FS HVASK+ S   GK +R V++MAKKSVGDL   DLKGK+VFVRADLN
Sbjct: 41  RLGFSAVVDSRFSVHVASKVHSV-RGKGARGVITMAKKSVGDLNSVDLKGKKVFVRADLN 99

Query: 109 VPLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILSTHL 146
           VPLDDNQNITDDTRIRAAIPTIK LI+NGAKVILSTHL
Sbjct: 100 VPLDDNQNITDDTRIRAAIPTIKFLIENGAKVILSTHL 137


>AT1G56190.2 | Symbols:  | phosphoglycerate kinase, putative |
           chr1:21028622-21030454 FORWARD
          Length = 405

 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 60/64 (93%)

Query: 83  MAKKSVGDLTGADLKGKRVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLIQNGAKVIL 142
           MAKKSVGDL   DLKGK+VFVRADLNVPLDDNQNITDDTRIRAAIPTIK LI+NGAKVIL
Sbjct: 1   MAKKSVGDLNSVDLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKFLIENGAKVIL 60

Query: 143 STHL 146
           STHL
Sbjct: 61  STHL 64


>AT1G79550.2 | Symbols: PGK | PGK (PHOSPHOGLYCERATE KINASE);
           phosphoglycerate kinase | chr1:29924347-29926295 REVERSE
          Length = 401

 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 54/62 (87%)

Query: 85  KKSVGDLTGADLKGKRVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILST 144
           K+SVG L  ADLKGK VFVR DLNVPLDDN NITDDTRIRAA+PTIK+L+ NG++V+L +
Sbjct: 4   KRSVGTLKEADLKGKSVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGNGSRVVLCS 63

Query: 145 HL 146
           HL
Sbjct: 64  HL 65


>AT1G79550.1 | Symbols: PGK | PGK (PHOSPHOGLYCERATE KINASE);
           phosphoglycerate kinase | chr1:29924347-29926295 REVERSE
          Length = 401

 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 54/62 (87%)

Query: 85  KKSVGDLTGADLKGKRVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILST 144
           K+SVG L  ADLKGK VFVR DLNVPLDDN NITDDTRIRAA+PTIK+L+ NG++V+L +
Sbjct: 4   KRSVGTLKEADLKGKSVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGNGSRVVLCS 63

Query: 145 HL 146
           HL
Sbjct: 64  HL 65