Jatropha Genome Database

JcCB0309841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0309841.10 - phase: 0 /partial
         (228 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13930.1 | Symbols: CHS, TT4, ATCHS | TT4 (TRANSPARENT TESTA ...   317   3e-87
AT4G00040.1 | Symbols:  | chalcone and stilbene synthase family ...   172   1e-43
AT1G02050.1 | Symbols:  | chalcone and stilbene synthase family ...   172   2e-43
AT4G34850.1 | Symbols:  | chalcone and stilbene synthase family ...   169   2e-42

>AT5G13930.1 | Symbols: CHS, TT4, ATCHS | TT4 (TRANSPARENT TESTA 4);
           naringenin-chalcone synthase | chr5:4488762-4490035
           FORWARD
          Length = 395

 Score =  317 bits (813), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 146/228 (64%), Positives = 182/228 (79%)

Query: 1   MESIFESRGATGLATVLAIGTANPPNCIYQADYPHFYFKITRSEHMKELKEKFIRICQKS 60
           ++ I +++ A G A +LAIGTANP N + QA+YP +YF+IT SEHM +LKEKF R+C KS
Sbjct: 9   LDEIRQAQRADGPAGILAIGTANPENHVLQAEYPDYYFRITNSEHMTDLKEKFKRMCDKS 68

Query: 61  EIKKRYMYLTEDIIQKNSSIATYKAPSLDARQKILVHEVPKLGEEAATKAIQEWGQPISK 120
            I+KR+M+LTE+ +++N  +  Y APSLD RQ I+V EVPKLG+EAA KAI+EWGQP SK
Sbjct: 69  TIRKRHMHLTEEFLKENPHMCAYMAPSLDTRQDIVVVEVPKLGKEAAVKAIKEWGQPKSK 128

Query: 121 ITHLIFCTASGVNMPGADLELVKLLGLQNSVKRFMMYQQGCFAGAAALRLAKDIAENNFD 180
           ITH++FCT SGV+MPGAD +L KLLGL+ SVKR MMYQQGCFAG   LR+AKD+AENN  
Sbjct: 129 ITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRIAKDLAENNRG 188

Query: 181 SRILIVCSENMTVSFHAPSDTHLDILVGSAIFGDGAAAIIVGSTPSTS 228
           +R+L+VCSE   V+F  PSDTHLD LVG A+F DGAAA+IVGS P TS
Sbjct: 189 ARVLVVCSEITAVTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDTS 236


>AT4G00040.1 | Symbols:  | chalcone and stilbene synthase family
           protein | chr4:14653-15897 FORWARD
          Length = 385

 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/217 (38%), Positives = 133/217 (61%), Gaps = 1/217 (0%)

Query: 12  GLATVLAIGTANPPNCIYQADYPHFYFKITRSEHMKELKEKFIRICQKSEIKKRYMYLTE 71
           G ATVLA+G A P N + Q +    Y +  + +++  +K+K   +C+ + +K RY  ++ 
Sbjct: 17  GKATVLALGKALPSNVVSQENLVEEYLREIKCDNLS-IKDKLQHLCKSTTVKTRYTVMSR 75

Query: 72  DIIQKNSSIATYKAPSLDARQKILVHEVPKLGEEAATKAIQEWGQPISKITHLIFCTASG 131
           + + K   +AT  +P++  R +I    V ++  EA+   I+EWG+ +  ITHL++ ++S 
Sbjct: 76  ETLHKYPELATEGSPTIKQRLEIANDAVVQMAYEASLVCIKEWGRAVEDITHLVYVSSSE 135

Query: 132 VNMPGADLELVKLLGLQNSVKRFMMYQQGCFAGAAALRLAKDIAENNFDSRILIVCSENM 191
             +PG DL L   LGL N V+R M+Y  GC+ G + LR+AKDIAENN  SR+L+  SE  
Sbjct: 136 FRLPGGDLYLSAQLGLSNEVQRVMLYFLGCYGGLSGLRVAKDIAENNPGSRVLLTTSETT 195

Query: 192 TVSFHAPSDTHLDILVGSAIFGDGAAAIIVGSTPSTS 228
            + F  P+      LVG+A+FGDGAAA+I+G+ P+ S
Sbjct: 196 VLGFRPPNKARPYNLVGAALFGDGAAALIIGADPTES 232


>AT1G02050.1 | Symbols:  | chalcone and stilbene synthase family
           protein | chr1:359164-360441 REVERSE
          Length = 395

 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/214 (39%), Positives = 130/214 (60%), Gaps = 1/214 (0%)

Query: 12  GLATVLAIGTANPPNCIYQADYPHFYFKITRSEHMKELKEKFIRICQKSEIKKRYMYLTE 71
           G AT+LA+G A P   + Q +    + + T+ +    +KEK   +C+ + +K RY  LT 
Sbjct: 24  GKATLLALGKAFPSQVVPQENLVEGFLRDTKCDDAF-IKEKLEHLCKTTTVKTRYTVLTR 82

Query: 72  DIIQKNSSIATYKAPSLDARQKILVHEVPKLGEEAATKAIQEWGQPISKITHLIFCTASG 131
           +I+ K   + T  +P++  R +I    V ++  EA+   I+EWG+P+  ITH+++ ++S 
Sbjct: 83  EILAKYPELTTEGSPTIKQRLEIANEAVVEMALEASLGCIKEWGRPVEDITHIVYVSSSE 142

Query: 132 VNMPGADLELVKLLGLQNSVKRFMMYQQGCFAGAAALRLAKDIAENNFDSRILIVCSENM 191
           + +PG DL L   LGL+N V R M+Y  GC+ G   LR+AKDIAENN  SR+L+  SE  
Sbjct: 143 IRLPGGDLYLSAKLGLRNDVNRVMLYFLGCYGGVTGLRVAKDIAENNPGSRVLLTTSETT 202

Query: 192 TVSFHAPSDTHLDILVGSAIFGDGAAAIIVGSTP 225
            + F  P+      LVG+A+FGDGAAA+I+G+ P
Sbjct: 203 ILGFRPPNKARPYDLVGAALFGDGAAAVIIGADP 236


>AT4G34850.1 | Symbols:  | chalcone and stilbene synthase family
           protein | chr4:16608349-16609720 FORWARD
          Length = 392

 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 128/220 (58%), Gaps = 1/220 (0%)

Query: 6   ESRGATGLATVLAIGTANPPNCIYQADYPHFYFKITRSEHMKELKEKFIRICQKSEIKKR 65
           E +   G AT+LA+G A P   + Q      YFK T+ +   ELK+K  R+C+ + +K R
Sbjct: 12  EKKSNPGKATILALGKAFPHQLVMQEYLVDGYFKTTKCDD-PELKQKLTRLCKTTTVKTR 70

Query: 66  YMYLTEDIIQKNSSIATYKAPSLDARQKILVHEVPKLGEEAATKAIQEWGQPISKITHLI 125
           Y+ ++E+I++K   +A     ++  R  I    V ++  EA+   I+ WG+ IS ITH++
Sbjct: 71  YVVMSEEILKKYPELAIEGGSTVTQRLDICNDAVTEMAVEASRACIKNWGRSISDITHVV 130

Query: 126 FCTASGVNMPGADLELVKLLGLQNSVKRFMMYQQGCFAGAAALRLAKDIAENNFDSRILI 185
           + ++S   +PG DL L K LGL     R ++Y  GC  G A LR+AKDIAENN  SR+L+
Sbjct: 131 YVSSSEARLPGGDLYLAKGLGLSPDTHRVLLYFVGCSGGVAGLRVAKDIAENNPGSRVLL 190

Query: 186 VCSENMTVSFHAPSDTHLDILVGSAIFGDGAAAIIVGSTP 225
             SE   + F  PS      LVG A+FGDGA A+I+GS P
Sbjct: 191 ATSETTIIGFKPPSVDRPYDLVGVALFGDGAGAMIIGSDP 230