Jatropha Genome Database
- JcCB0308731.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0308731.10 + phase: 0 /TE
(313 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G42520.1 | Symbols: | DEAD box RNA helicase, putative | chr2... 205 3e-53
AT3G58510.3 | Symbols: | DEAD box RNA helicase, putative (RH11)... 204 7e-53
AT3G58510.2 | Symbols: | DEAD box RNA helicase, putative (RH11)... 204 7e-53
AT3G58510.1 | Symbols: | DEAD box RNA helicase, putative (RH11)... 204 7e-53
AT3G58570.1 | Symbols: | DEAD box RNA helicase, putative | chr3... 202 2e-52
AT2G33730.1 | Symbols: | DEAD box RNA helicase, putative | chr2... 84 1e-16
AT1G20920.1 | Symbols: | DEAD box RNA helicase, putative | chr1... 82 3e-16
AT1G55150.1 | Symbols: | DEAD box RNA helicase, putative (RH20)... 81 7e-16
AT3G09620.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 80 2e-15
AT1G20920.2 | Symbols: | DEAD box RNA helicase, putative | chr1... 79 3e-15
AT5G63120.1 | Symbols: | ethylene-responsive DEAD box RNA helic... 78 6e-15
AT3G02065.3 | Symbols: | DEAD/DEAH box helicase family protein ... 78 6e-15
AT3G02065.2 | Symbols: | DEAD/DEAH box helicase family protein ... 78 6e-15
AT5G63120.2 | Symbols: | ethylene-responsive DEAD box RNA helic... 78 6e-15
AT3G09720.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 77 1e-14
AT1G31970.1 | Symbols: STRS1 | STRS1 (STRESS RESPONSE SUPPRESSOR... 77 1e-14
AT4G16630.1 | Symbols: | DEAD/DEAH box helicase, putative (RH28... 74 8e-14
AT2G47330.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 74 1e-13
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 73 2e-13
AT4G33370.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 72 6e-13
AT3G06480.1 | Symbols: | DEAD box RNA helicase, putative | chr3... 70 2e-12
AT4G00660.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 69 5e-12
AT4G00660.2 | Symbols: | DEAD/DEAH box helicase, putative | chr... 69 5e-12
AT1G16280.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 68 7e-12
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 67 1e-11
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 67 1e-11
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 67 1e-11
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 67 1e-11
AT5G60990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH10... 67 2e-11
AT1G77030.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 67 2e-11
AT3G61240.2 | Symbols: | DEAD/DEAH box helicase, putative (RH12... 66 3e-11
AT3G61240.1 | Symbols: | DEAD/DEAH box helicase, putative (RH12... 66 3e-11
AT2G45810.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 63 3e-10
AT5G54910.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 62 4e-10
AT4G34910.1 | Symbols: | DEAD/DEAH box helicase, putative (RH16... 61 9e-10
AT2G40700.1 | Symbols: | DEAD/DEAH box helicase, putative (RH17... 61 1e-09
AT3G22330.1 | Symbols: PMH2 | PMH2 (putative mitochondrial RNA h... 60 2e-09
AT3G16840.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 59 4e-09
AT3G22310.1 | Symbols: PMH1, ATRH9 | PMH1 (PUTATIVE MITOCHONDRIA... 59 4e-09
AT5G26742.2 | Symbols: emb1138 | emb1138 (embryo defective 1138)... 58 9e-09
AT5G26742.1 | Symbols: emb1138 | emb1138 (embryo defective 1138)... 58 9e-09
AT1G12770.1 | Symbols: EMB1586 | EMB1586 (embryo defective 1586)... 57 2e-08
AT1G63250.1 | Symbols: | DEAD box RNA helicase, putative | chr1... 56 3e-08
AT2G07750.1 | Symbols: | DEAD box RNA helicase, putative | chr2... 55 5e-08
AT1G54270.1 | Symbols: EIF4A-2 | EIF4A-2; ATP-dependent helicase... 54 1e-07
AT5G14610.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 53 2e-07
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC ... 53 2e-07
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC ... 53 2e-07
AT5G62190.1 | Symbols: PRH75 | PRH75; ATP-dependent helicase/ DE... 53 3e-07
AT5G65900.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 53 3e-07
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC ... 53 3e-07
AT1G71370.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 52 5e-07
AT3G19760.1 | Symbols: | eukaryotic translation initiation fact... 52 5e-07
AT1G71280.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 52 5e-07
AT3G18600.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 50 1e-06
AT1G72730.1 | Symbols: | eukaryotic translation initiation fact... 50 1e-06
AT5G63630.1 | Symbols: | DEAD box RNA helicase, putative | chr5... 50 2e-06
AT3G02065.1 | Symbols: | DEAD/DEAH box helicase family protein ... 50 2e-06
AT5G08620.1 | Symbols: STRS2, ATRH25 | STRS2 (STRESS RESPONSE SU... 50 3e-06
AT3G06980.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 49 3e-06
AT4G09730.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 49 6e-06
AT5G08610.1 | Symbols: | DEAD box RNA helicase (RH26) | chr5:27... 48 6e-06
>AT2G42520.1 | Symbols: | DEAD box RNA helicase, putative |
chr2:17705382-17708744 FORWARD
Length = 633
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 134/218 (61%), Gaps = 53/218 (24%)
Query: 96 DPFDVSDHFDELEITEGDGSNNDPNENSAINFDAYEDIPVEITGSNIPAPVDTFTEIDLG 155
+PF+ D E TE D N+ INFDAYEDIP+E +G N+P PV+TF EIDLG
Sbjct: 116 NPFENDDSEPEPAFTEQD--------NTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLG 167
Query: 156 MGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLK 215
LN NI+RCKYVKPTP+Q+HAIPI + GRDLMACAQTGSGKTAAFCFPII GI+++ +
Sbjct: 168 EALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKD--Q 225
Query: 216 AVGSGRGRARVTYPSALILSPTRELSCQVRTVYFMHWCFLCFLKLLFYSFFFCLIDYRFM 275
V RG +R YP A+ILSPTREL+
Sbjct: 226 HVQRPRG-SRTVYPLAVILSPTRELA---------------------------------- 250
Query: 276 GVCXLVCFCQIHDEAQKFAYNTGVKVVVAYGGAPIIQQ 313
QIHDEA+KF+Y TGVKVVVAYGG PI QQ
Sbjct: 251 --------SQIHDEAKKFSYQTGVKVVVAYGGTPINQQ 280
>AT3G58510.3 | Symbols: | DEAD box RNA helicase, putative (RH11) |
chr3:21640608-21643464 FORWARD
Length = 612
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 110/206 (53%), Positives = 132/206 (64%), Gaps = 49/206 (23%)
Query: 112 GDGSNNDP----NENSAINFDAYEDIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKY 167
GD + +P EN+ INFDAYEDIPVE +G ++P PV+TF +IDLG LN NI+RCKY
Sbjct: 112 GDDAELEPVFTEQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKY 171
Query: 168 VKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVT 227
V+PTP+Q+HAIPI +A RDLMACAQTGSGKTAAFCFPII GI+++ + V RG +R
Sbjct: 172 VRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKD--QHVERPRG-SRAV 228
Query: 228 YPSALILSPTRELSCQVRTVYFMHWCFLCFLKLLFYSFFFCLIDYRFMGVCXLVCFCQIH 287
YP A+ILSPTREL+C QIH
Sbjct: 229 YPFAVILSPTRELAC------------------------------------------QIH 246
Query: 288 DEAQKFAYNTGVKVVVAYGGAPIIQQ 313
DEA+KF+Y TGVKVVVAYGG PI QQ
Sbjct: 247 DEAKKFSYQTGVKVVVAYGGTPIHQQ 272
>AT3G58510.2 | Symbols: | DEAD box RNA helicase, putative (RH11) |
chr3:21640608-21643464 FORWARD
Length = 612
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 110/206 (53%), Positives = 132/206 (64%), Gaps = 49/206 (23%)
Query: 112 GDGSNNDP----NENSAINFDAYEDIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKY 167
GD + +P EN+ INFDAYEDIPVE +G ++P PV+TF +IDLG LN NI+RCKY
Sbjct: 112 GDDAELEPVFTEQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKY 171
Query: 168 VKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVT 227
V+PTP+Q+HAIPI +A RDLMACAQTGSGKTAAFCFPII GI+++ + V RG +R
Sbjct: 172 VRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKD--QHVERPRG-SRAV 228
Query: 228 YPSALILSPTRELSCQVRTVYFMHWCFLCFLKLLFYSFFFCLIDYRFMGVCXLVCFCQIH 287
YP A+ILSPTREL+C QIH
Sbjct: 229 YPFAVILSPTRELAC------------------------------------------QIH 246
Query: 288 DEAQKFAYNTGVKVVVAYGGAPIIQQ 313
DEA+KF+Y TGVKVVVAYGG PI QQ
Sbjct: 247 DEAKKFSYQTGVKVVVAYGGTPIHQQ 272
>AT3G58510.1 | Symbols: | DEAD box RNA helicase, putative (RH11) |
chr3:21640608-21643464 FORWARD
Length = 612
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 110/206 (53%), Positives = 132/206 (64%), Gaps = 49/206 (23%)
Query: 112 GDGSNNDP----NENSAINFDAYEDIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKY 167
GD + +P EN+ INFDAYEDIPVE +G ++P PV+TF +IDLG LN NI+RCKY
Sbjct: 112 GDDAELEPVFTEQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKY 171
Query: 168 VKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVT 227
V+PTP+Q+HAIPI +A RDLMACAQTGSGKTAAFCFPII GI+++ + V RG +R
Sbjct: 172 VRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKD--QHVERPRG-SRAV 228
Query: 228 YPSALILSPTRELSCQVRTVYFMHWCFLCFLKLLFYSFFFCLIDYRFMGVCXLVCFCQIH 287
YP A+ILSPTREL+C QIH
Sbjct: 229 YPFAVILSPTRELAC------------------------------------------QIH 246
Query: 288 DEAQKFAYNTGVKVVVAYGGAPIIQQ 313
DEA+KF+Y TGVKVVVAYGG PI QQ
Sbjct: 247 DEAKKFSYQTGVKVVVAYGGTPIHQQ 272
>AT3G58570.1 | Symbols: | DEAD box RNA helicase, putative |
chr3:21657099-21660352 FORWARD
Length = 646
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/206 (53%), Positives = 131/206 (63%), Gaps = 49/206 (23%)
Query: 112 GDGSNNDP----NENSAINFDAYEDIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKY 167
G+ N DP EN+ INF+AYEDIP+E +G N+P PV+TF EIDLG LN NI+RCKY
Sbjct: 107 GNDGNADPAVNEQENTVINFEAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKY 166
Query: 168 VKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVT 227
VKPTP+Q++AIPI AGRDLMACAQTGSGKTAAFCFPII GI+++ + + RG R
Sbjct: 167 VKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKD--QHIERPRG-VRGV 223
Query: 228 YPSALILSPTRELSCQVRTVYFMHWCFLCFLKLLFYSFFFCLIDYRFMGVCXLVCFCQIH 287
YP A+ILSPTREL+C QIH
Sbjct: 224 YPLAVILSPTRELAC------------------------------------------QIH 241
Query: 288 DEAQKFAYNTGVKVVVAYGGAPIIQQ 313
DEA+KF+Y TGVKVVVAYGG P+ QQ
Sbjct: 242 DEARKFSYQTGVKVVVAYGGTPVNQQ 267
>AT2G33730.1 | Symbols: | DEAD box RNA helicase, putative |
chr2:14265679-14267880 REVERSE
Length = 733
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 9/126 (7%)
Query: 131 EDIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMAC 190
ED + GS IP P+ ++ E L L + ++R Y KP+PIQ AIP+ + RD++
Sbjct: 297 EDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGI 356
Query: 191 AQTGSGKTAAFCFPIIRGILR-NGLKAVGSGRGRARVTYPSALILSPTRELSCQV--RTV 247
A+TGSGKTAAF P++ I R + G P A++++PTREL+ Q+ TV
Sbjct: 357 AETGSGKTAAFVLPMLAYISRLPPMSEENETEG------PYAVVMAPTRELAQQIEEETV 410
Query: 248 YFMHWC 253
F H+
Sbjct: 411 KFAHYL 416
>AT1G20920.1 | Symbols: | DEAD box RNA helicase, putative |
chr1:7285342-7288842 FORWARD
Length = 1166
Score = 82.4 bits (202), Expect = 3e-16, Method: Composition-based stats.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 50/183 (27%)
Query: 131 EDIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMAC 190
+++ +++ G ++P P+ + + L + + +K+ Y KP PIQ A+PI ++GRD +
Sbjct: 513 KELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGV 572
Query: 191 AQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVRTVYFM 250
A+TGSGKT F P++R I G G P L+++PTREL
Sbjct: 573 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDG--------PIGLVMAPTREL---------- 614
Query: 251 HWCFLCFLKLLFYSFFFCLIDYRFMGVCXLVCFCQIHDEAQKFAYNTGVKVVVAYGGAPI 310
QIH + +KF+ G++ V YGG+ +
Sbjct: 615 --------------------------------VQQIHSDIRKFSKPLGIRCVPVYGGSGV 642
Query: 311 IQQ 313
QQ
Sbjct: 643 AQQ 645
>AT1G55150.1 | Symbols: | DEAD box RNA helicase, putative (RH20) |
chr1:20574634-20577141 FORWARD
Length = 501
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 8/111 (7%)
Query: 135 VEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTG 194
+ + G +IP PV +F ++ + E +K+ + +PTPIQ P+A+ GRDL+ A+TG
Sbjct: 87 ITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETG 146
Query: 195 SGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVR 245
SGKT ++ P I + + A G G P L+L+PTREL+ Q++
Sbjct: 147 SGKTLSYLLPAIVHVNAQPMLAHGDG--------PIVLVLAPTRELAVQIQ 189
>AT3G09620.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:2949152-2952205 REVERSE
Length = 989
Score = 79.7 bits (195), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 9/118 (7%)
Query: 128 DAY-EDIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRD 186
+AY +++ +++ G ++P P+ + + L + + +K+ Y KP PIQ A+PI ++GRD
Sbjct: 376 NAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRD 435
Query: 187 LMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQV 244
+ A+TGSGKT F P++R I G G P L+++PTREL Q+
Sbjct: 436 CIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDG--------PIGLVMAPTRELVQQI 485
>AT1G20920.2 | Symbols: | DEAD box RNA helicase, putative |
chr1:7286356-7288842 FORWARD
Length = 828
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 50/183 (27%)
Query: 131 EDIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMAC 190
+++ +++ G ++P P+ + + L + + +K+ Y KP PIQ A+PI ++GRD +
Sbjct: 175 KELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGV 234
Query: 191 AQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVRTVYFM 250
A+TGSGKT F P++R I G G P L+++PTREL
Sbjct: 235 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDG--------PIGLVMAPTREL---------- 276
Query: 251 HWCFLCFLKLLFYSFFFCLIDYRFMGVCXLVCFCQIHDEAQKFAYNTGVKVVVAYGGAPI 310
QIH + +KF+ G++ V YGG+ +
Sbjct: 277 --------------------------------VQQIHSDIRKFSKPLGIRCVPVYGGSGV 304
Query: 311 IQQ 313
QQ
Sbjct: 305 AQQ 307
>AT5G63120.1 | Symbols: | ethylene-responsive DEAD box RNA
helicase, putative (RH30) | chr5:25319798-25322071
REVERSE
Length = 484
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 80/190 (42%), Gaps = 52/190 (27%)
Query: 120 NENSAINFDAYEDIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIP 179
E + DI VE G ++P P+ F + + + E I + + +PTPIQ P
Sbjct: 140 TEQDVAMYRTERDISVE--GRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWP 197
Query: 180 IAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRE 239
+A+ GRDL+ A+TGSGKT A+ P + + + +G G P LIL+PTRE
Sbjct: 198 MALKGRDLIGIAETGSGKTLAYLLPALVHV--SAQPRLGQDDG------PIVLILAPTRE 249
Query: 240 LSCQVRTVYFMHWCFLCFLKLLFYSFFFCLIDYRFMGVCXLVCFCQIHDEAQKFAYNTGV 299
L+ QI +E++KF +GV
Sbjct: 250 LA------------------------------------------VQIQEESRKFGLRSGV 267
Query: 300 KVVVAYGGAP 309
+ YGGAP
Sbjct: 268 RSTCIYGGAP 277
>AT3G02065.3 | Symbols: | DEAD/DEAH box helicase family protein |
chr3:359136-360734 FORWARD
Length = 505
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 63/113 (55%), Gaps = 5/113 (4%)
Query: 132 DIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACA 191
DI V+ GS +P PV TFT L L N++ Y PTPIQ AIP A+ G+ L+A A
Sbjct: 95 DIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASA 154
Query: 192 QTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQV 244
TGSGKTA+F PII + S + P A++L+PTREL QV
Sbjct: 155 DTGSGKTASFLVPII-----SRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
>AT3G02065.2 | Symbols: | DEAD/DEAH box helicase family protein |
chr3:359136-360734 FORWARD
Length = 505
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 63/113 (55%), Gaps = 5/113 (4%)
Query: 132 DIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACA 191
DI V+ GS +P PV TFT L L N++ Y PTPIQ AIP A+ G+ L+A A
Sbjct: 95 DIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASA 154
Query: 192 QTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQV 244
TGSGKTA+F PII + S + P A++L+PTREL QV
Sbjct: 155 DTGSGKTASFLVPII-----SRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
>AT5G63120.2 | Symbols: | ethylene-responsive DEAD box RNA
helicase, putative (RH30) | chr5:25318967-25322071
REVERSE
Length = 591
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 80/190 (42%), Gaps = 52/190 (27%)
Query: 120 NENSAINFDAYEDIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIP 179
E + DI VE G ++P P+ F + + + E I + + +PTPIQ P
Sbjct: 140 TEQDVAMYRTERDISVE--GRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWP 197
Query: 180 IAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRE 239
+A+ GRDL+ A+TGSGKT A+ P + + + +G G P LIL+PTRE
Sbjct: 198 MALKGRDLIGIAETGSGKTLAYLLPALVHV--SAQPRLGQDDG------PIVLILAPTRE 249
Query: 240 LSCQVRTVYFMHWCFLCFLKLLFYSFFFCLIDYRFMGVCXLVCFCQIHDEAQKFAYNTGV 299
L+ QI +E++KF +GV
Sbjct: 250 LA------------------------------------------VQIQEESRKFGLRSGV 267
Query: 300 KVVVAYGGAP 309
+ YGGAP
Sbjct: 268 RSTCIYGGAP 277
>AT3G09720.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:2980483-2983268 REVERSE
Length = 541
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 25/149 (16%)
Query: 106 ELEITEGDGSNNDPNE-NSAINFDAY--EDIPVEITGSNIPAPVDTFTEIDLGMG----L 158
E +IT+ + N E N + DA + + ++G+NIP P+ +F E+ G +
Sbjct: 93 EEQITKNEIVENPKKELNRQMERDALSRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYI 152
Query: 159 NENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILR---NGLK 215
N+ + +PTPIQ+ AIPI ++GR+ ACA TGSGKT AF P++ + R +G++
Sbjct: 153 LRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIR 212
Query: 216 AVGSGRGRARVTYPSALILSPTRELSCQV 244
AV ILSP REL+ Q
Sbjct: 213 AV---------------ILSPARELAAQT 226
>AT1G31970.1 | Symbols: STRS1 | STRS1 (STRESS RESPONSE SUPPRESSOR
1); ATP binding / ATP-dependent helicase/ helicase/
nucleic acid binding | chr1:11479921-11482707 FORWARD
Length = 537
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 68/123 (55%), Gaps = 14/123 (11%)
Query: 131 EDIPVEITGSNIP----APVDTFTEIDLGMGLNENIKRC--KYVKPTPIQKHAIPIAVAG 184
E V +TG + A + TF E +L EN+ C + KP+PIQ H P + G
Sbjct: 96 EQQKVVVTGKGVEEAKYAALKTFAESNL----PENVLDCCKTFEKPSPIQSHTWPFLLDG 151
Query: 185 RDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQV 244
RDL+ A+TGSGKT AF P I +L+ K +G G ++ P+ L+LSPTREL+ Q+
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKKN-KKIGGG---SKKVNPTCLVLSPTRELAVQI 207
Query: 245 RTV 247
V
Sbjct: 208 SDV 210
>AT4G16630.1 | Symbols: | DEAD/DEAH box helicase, putative (RH28) |
chr4:9362176-9366449 REVERSE
Length = 789
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 146 VDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPI 205
DTF E++L L + Y KPTPIQ IP+A+ GRDL A A TGSGKTAAF P
Sbjct: 166 ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPT 225
Query: 206 IRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVRTV 247
+ +L RV LIL+PTREL+ Q+ ++
Sbjct: 226 LERLLFRP----------KRVFATRVLILTPTRELAVQIHSM 257
>AT2G47330.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr2:19429083-19431617 REVERSE
Length = 760
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 8/117 (6%)
Query: 128 DAYEDIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDL 187
D + + + ++G ++ PV TF + + IK+ Y KPT IQ A+PI ++GRD+
Sbjct: 209 DYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDV 268
Query: 188 MACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQV 244
+ A+TGSGKTAAF P+I I+ G P +I +PTREL+ Q+
Sbjct: 269 IGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEG--------PIGVICAPTRELAHQI 317
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD
Length = 591
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 21/172 (12%)
Query: 137 ITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSG 196
+ G +IP P+ F ++ + + +K V+PTPIQ +P+ +AGRD++ A TGSG
Sbjct: 136 VNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSG 195
Query: 197 KTAAFCFPIIRGILRNGLKA-VGSGRGRARVTYPSALILSPTRELSCQVRTVYFMHWCFL 255
KT F P+I L+ + + +G G P LI+ P+REL+ Q V
Sbjct: 196 KTLVFVLPMIMIALQEEMMMPIAAGEG------PIGLIVCPSRELARQTYEV-------- 241
Query: 256 CFLKLLFYSFFFCLIDYRFMGVCXLVCFCQIHDEAQKFAYNTGVKVVVAYGG 307
F L++ + + L+C I +Q GV +VVA G
Sbjct: 242 ------VEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPG 287
>AT4G33370.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr4:16069669-16071405 REVERSE
Length = 542
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 21/174 (12%)
Query: 135 VEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTG 194
+ + G +IP P+ F ++ L +K + PTPIQ +P+ ++GRD++ A TG
Sbjct: 85 ITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTG 144
Query: 195 SGKTAAFCFP-IIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVRTVYFMHWC 253
SGKT F P II + + + +G G P AL++ P+REL+ Q V
Sbjct: 145 SGKTLVFVLPMIILALQEEIMMPIAAGEG------PIALVICPSRELAKQTYDV------ 192
Query: 254 FLCFLKLLFYSFFFCLIDYRFMGVCXLVCFCQIHDEAQKFAYNTGVKVVVAYGG 307
F L++ + + L+C + +Q GV +VVA G
Sbjct: 193 --------VEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPG 238
>AT3G06480.1 | Symbols: | DEAD box RNA helicase, putative |
chr3:1985697-1989666 REVERSE
Length = 1088
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 57/117 (48%), Gaps = 21/117 (17%)
Query: 135 VEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTG 194
V TG NIPAP TF L + + + PTPIQ PIA+ RD++A A+TG
Sbjct: 423 VTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTG 482
Query: 195 SGKTAAFCFPII------RGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVR 245
SGKT + P R RNG P+ LIL+PTREL+ Q++
Sbjct: 483 SGKTLGYLIPAFILLRHCRNDSRNG---------------PTVLILAPTRELATQIQ 524
>AT4G00660.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr4:274638-277438 FORWARD
Length = 505
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 17/101 (16%)
Query: 147 DTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPII 206
D F + +L MG+ E + +P+PIQ+ +IPIA+ GRD++A A+ G+GKTAAFC P++
Sbjct: 135 DYFLKRELLMGIYEK----GFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVL 190
Query: 207 RGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVRTV 247
I ++ A+I+ PTREL+ Q V
Sbjct: 191 EKIDQDN-------------NVIQAVIIVPTRELALQTSQV 218
>AT4G00660.2 | Symbols: | DEAD/DEAH box helicase, putative |
chr4:274638-277438 FORWARD
Length = 505
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 17/101 (16%)
Query: 147 DTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPII 206
D F + +L MG+ E + +P+PIQ+ +IPIA+ GRD++A A+ G+GKTAAFC P++
Sbjct: 135 DYFLKRELLMGIYEK----GFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVL 190
Query: 207 RGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVRTV 247
I ++ A+I+ PTREL+ Q V
Sbjct: 191 EKIDQDN-------------NVIQAVIIVPTRELALQTSQV 218
>AT1G16280.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:5568482-5570487 REVERSE
Length = 491
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 17/94 (18%)
Query: 155 GMGLNE-NIKRCKYV---KPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGIL 210
G+GL E ++ CK + KPTP+Q H +P +AGRD++ AQTGSGKTAAF PI+ +
Sbjct: 62 GLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLA 121
Query: 211 RNGLKAVGSGRGRARVTYPSALILSPTRELSCQV 244
+ AL+++PTREL+ Q+
Sbjct: 122 EDPYGVF-------------ALVVTPTRELAFQL 142
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 618
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 135 VEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTG 194
+ ++G +P P+ +F L + + PTPIQ + PIA+ GRD++A A+TG
Sbjct: 146 ITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTG 205
Query: 195 SGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVR 245
SGKT + P G + R +R+ P+ L+LSPTREL+ Q++
Sbjct: 206 SGKTLGYLIP--------GFLHLQRIRNDSRMG-PTILVLSPTRELATQIQ 247
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 619
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 135 VEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTG 194
+ ++G +P P+ +F L + + PTPIQ + PIA+ GRD++A A+TG
Sbjct: 146 ITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTG 205
Query: 195 SGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVR 245
SGKT + P G + R +R+ P+ L+LSPTREL+ Q++
Sbjct: 206 SGKTLGYLIP--------GFLHLQRIRNDSRMG-PTILVLSPTRELATQIQ 247
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 619
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 135 VEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTG 194
+ ++G +P P+ +F L + + PTPIQ + PIA+ GRD++A A+TG
Sbjct: 146 ITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTG 205
Query: 195 SGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVR 245
SGKT + P G + R +R+ P+ L+LSPTREL+ Q++
Sbjct: 206 SGKTLGYLIP--------GFLHLQRIRNDSRMG-PTILVLSPTRELATQIQ 247
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 619
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 135 VEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTG 194
+ ++G +P P+ +F L + + PTPIQ + PIA+ GRD++A A+TG
Sbjct: 146 ITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTG 205
Query: 195 SGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVR 245
SGKT + P G + R +R+ P+ L+LSPTREL+ Q++
Sbjct: 206 SGKTLGYLIP--------GFLHLQRIRNDSRMG-PTILVLSPTRELATQIQ 247
>AT5G60990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH10) |
chr5:24546601-24549148 REVERSE
Length = 456
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 146 VDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPI 205
V TF E+ + L + +R + P+ IQ A+P A+ G+D++ AQTGSGKT AF PI
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI 67
Query: 206 IRGILRNGLKAVGSGRGRARVTYPS--ALILSPTRELSCQV 244
++ +L S + R P+ A +LSPTREL+ Q+
Sbjct: 68 LQALLEY---VYDSEPKKGRRPDPAFFACVLSPTRELAIQI 105
>AT1G77030.1 | Symbols: | ATP binding / ATP-dependent helicase/ RNA
binding / helicase/ hydrolase, acting on acid
anhydrides, in phosphorus-containing anhydrides /
nucleic acid binding | chr1:28947492-28951526 REVERSE
Length = 891
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 11/96 (11%)
Query: 149 FTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRG 208
F ++LG + IK+ Y PTPIQ+ +P+ ++G D++A A+TGSGKTAAF P++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 209 ILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQV 244
+ ++ V G R ALILSPTR+L+ Q
Sbjct: 90 LKQH----VPQGGVR-------ALILSPTRDLAEQT 114
>AT3G61240.2 | Symbols: | DEAD/DEAH box helicase, putative (RH12) |
chr3:22666590-22669154 FORWARD
Length = 498
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 17/101 (16%)
Query: 147 DTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPII 206
D F + DL G+ E + KP+PIQ+ +IPIA+ G D++A A+ G+GKT AFC P++
Sbjct: 128 DYFLKRDLLKGIYEK----GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVL 183
Query: 207 RGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVRTV 247
I N A+IL PTREL+ Q V
Sbjct: 184 EKIDPNN-------------NVIQAMILVPTRELALQTSQV 211
>AT3G61240.1 | Symbols: | DEAD/DEAH box helicase, putative (RH12) |
chr3:22666590-22669154 FORWARD
Length = 498
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 17/101 (16%)
Query: 147 DTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPII 206
D F + DL G+ E + KP+PIQ+ +IPIA+ G D++A A+ G+GKT AFC P++
Sbjct: 128 DYFLKRDLLKGIYEK----GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVL 183
Query: 207 RGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVRTV 247
I N A+IL PTREL+ Q V
Sbjct: 184 EKIDPNN-------------NVIQAMILVPTRELALQTSQV 211
>AT2G45810.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr2:18859836-18862318 FORWARD
Length = 528
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 21/103 (20%)
Query: 147 DTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPII 206
D F + DL G+ E + KP+PIQ+ +IPIA+ G D++A A+ G+GKT AFC P +
Sbjct: 158 DYFLKRDLLRGIYEK----GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTL 213
Query: 207 RGI--LRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVRTV 247
I N ++AV IL PTREL+ Q V
Sbjct: 214 EKIDPENNVIQAV---------------ILVPTRELALQTSQV 241
>AT5G54910.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:22298668-22301719 REVERSE
Length = 739
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 144 APVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCF 203
A V F ++ + +K KYV T +Q AIP A+ GRD++ A+TGSGKT AF
Sbjct: 68 AGVRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVI 127
Query: 204 PIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQ 243
PI+ + R + G G +I+SPTREL+ Q
Sbjct: 128 PILEKLHRERW-SPEDGVG--------CIIISPTRELAAQ 158
>AT4G34910.1 | Symbols: | DEAD/DEAH box helicase, putative (RH16) |
chr4:16631661-16634834 FORWARD
Length = 626
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 148 TFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIR 207
+F E+ L L + + KPT IQ+ AIP + G+D++A A+TGSGKT A+ P+++
Sbjct: 47 SFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQ 106
Query: 208 GILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQVRT 246
K + + PSA IL P+REL QV T
Sbjct: 107 -------KLFSADSVSKKKLAPSAFILVPSRELCQQVYT 138
>AT2G40700.1 | Symbols: | DEAD/DEAH box helicase, putative (RH17) |
chr2:16976783-16979392 FORWARD
Length = 609
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 13/111 (11%)
Query: 148 TFTEIDLGMGLNENIK-RCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPII 206
+F+ + L L++ +K R + PT +Q AIP+ ++GRD++ A TG+GKT A+ P+I
Sbjct: 30 SFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI 89
Query: 207 RGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQV-----RTVYFMHW 252
+ + K R+ T+ AL++ PTREL QV + ++ HW
Sbjct: 90 HHLQGHSPKV-----DRSHGTF--ALVIVPTRELCLQVYETLEKLLHRFHW 133
>AT3G22330.1 | Symbols: PMH2 | PMH2 (putative mitochondrial RNA
helicase 2); ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr3:7892641-7895145
FORWARD
Length = 616
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 7/77 (9%)
Query: 172 PIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSA 231
PIQK + A+ GRD++ A+TG+GKT AF PII I++ K GRGR P
Sbjct: 129 PIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAK---HGRGR----NPLC 181
Query: 232 LILSPTRELSCQVRTVY 248
L+L+PTREL+ QV +
Sbjct: 182 LVLAPTRELARQVEKEF 198
>AT3G16840.1 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr3:5738020-5743042
REVERSE
Length = 826
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 8/95 (8%)
Query: 158 LNENIKRCKYVKPTPIQKHAIPIAV-AGRDLMACAQTGSGKTAAFCFPIIRGIL--RNGL 214
L ++I R + +PT IQK +A G+D++ A+TGSGKT AF PI++ +L R +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKV 260
Query: 215 KAVGSGRGRARVTYPS-----ALILSPTRELSCQV 244
+ + +G Y + ALI++PTREL+ QV
Sbjct: 261 GKLYALKGEEAQKYAADGYLRALIITPTRELALQV 295
>AT3G22310.1 | Symbols: PMH1, ATRH9 | PMH1 (PUTATIVE MITOCHONDRIAL
RNA HELICASE 1); ATP-dependent helicase/ DNA binding /
RNA binding | chr3:7887382-7889806 FORWARD
Length = 610
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 7/77 (9%)
Query: 172 PIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSA 231
PIQK + A+ GRD++ A+TG+GKT AF PII I++ K GRG+ P
Sbjct: 141 PIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAK---HGRGK----NPQC 193
Query: 232 LILSPTRELSCQVRTVY 248
L+L+PTREL+ QV +
Sbjct: 194 LVLAPTRELARQVEKEF 210
>AT5G26742.2 | Symbols: emb1138 | emb1138 (embryo defective 1138);
ATP binding / ATP-dependent helicase/ RNA binding /
helicase/ nucleic acid binding / zinc ion binding |
chr5:9285540-9288871 REVERSE
Length = 748
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 33/148 (22%)
Query: 100 VSDHFDELEITEGDGSNNDPNENSAINFDAYEDIPVEITGSNIPAPVDTFTEIDLGMGLN 159
+SDH DE ++ DG NN+ + D E++ + +++ L L
Sbjct: 79 LSDH-DEYDL---DGDNNN------VEADDGEELAI--------------SKLSLPQRLE 114
Query: 160 ENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVG- 218
E++++ PIQ+ + A+ GRD++A A+TG+GKT AF PII+ +
Sbjct: 115 ESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAF 174
Query: 219 --SGRGRARVTYPSALILSPTRELSCQV 244
SGR P L+L+PTREL+ QV
Sbjct: 175 RRSGR------LPKFLVLAPTRELAKQV 196
>AT5G26742.1 | Symbols: emb1138 | emb1138 (embryo defective 1138);
ATP binding / ATP-dependent helicase/ RNA binding /
helicase/ nucleic acid binding / zinc ion binding |
chr5:9285540-9288871 REVERSE
Length = 747
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 33/148 (22%)
Query: 100 VSDHFDELEITEGDGSNNDPNENSAINFDAYEDIPVEITGSNIPAPVDTFTEIDLGMGLN 159
+SDH DE ++ DG NN+ + D E++ + +++ L L
Sbjct: 79 LSDH-DEYDL---DGDNNN------VEADDGEELAI--------------SKLSLPQRLE 114
Query: 160 ENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVG- 218
E++++ PIQ+ + A+ GRD++A A+TG+GKT AF PII+ +
Sbjct: 115 ESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAF 174
Query: 219 --SGRGRARVTYPSALILSPTRELSCQV 244
SGR P L+L+PTREL+ QV
Sbjct: 175 RRSGR------LPKFLVLAPTRELAKQV 196
>AT1G12770.1 | Symbols: EMB1586 | EMB1586 (embryo defective 1586);
ATP binding / ATP-dependent helicase/ helicase/ nucleic
acid binding | chr1:4351888-4353543 FORWARD
Length = 551
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 131 EDIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMAC 190
E P EI A +F E+ L L ++++R + PT +Q A+P + G D +
Sbjct: 96 EKKPAEIVSPLFSAK--SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQ 153
Query: 191 AQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQV 244
+ TGSGKT A+ PI+ I K+ S + T A+I++P+REL Q+
Sbjct: 154 SYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
>AT1G63250.1 | Symbols: | DEAD box RNA helicase, putative |
chr1:23463284-23466451 REVERSE
Length = 798
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 168 VKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVT 227
+K T +Q + + G+D + A+TG+GK+ AF P I + LKA+ SG+G +V
Sbjct: 349 LKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETV----LKAMNSGKGVNKVA 404
Query: 228 YPSALILSPTRELSCQV 244
ALIL PTREL+ Q+
Sbjct: 405 PIFALILCPTRELASQI 421
>AT2G07750.1 | Symbols: | DEAD box RNA helicase, putative |
chr2:3576483-3580396 FORWARD
Length = 845
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 168 VKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVT 227
VK T +Q + + G+D + A+TG+GK+ AF P I + LKA+ SG+G +V
Sbjct: 396 VKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETV----LKAMNSGKGVHKVA 451
Query: 228 YPSALILSPTRELSCQV 244
LIL PTREL+ Q+
Sbjct: 452 PIFVLILCPTRELASQI 468
>AT1G54270.1 | Symbols: EIF4A-2 | EIF4A-2; ATP-dependent helicase/
translation initiation factor | chr1:20260495-20262018
FORWARD
Length = 412
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 17/97 (17%)
Query: 155 GMGLNENIKRCKYV----KPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGIL 210
MGL EN+ R Y KP+ IQ+ I G D++ AQ+G+GKTA FC +++ +
Sbjct: 43 AMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLD 102
Query: 211 RNGLKAVGSGRGRARVTYPSALILSPTRELSCQVRTV 247
L+ AL+L+PTREL+ Q+ V
Sbjct: 103 YALLQC-------------QALVLAPTRELAQQIEKV 126
>AT5G14610.1 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding / protein binding |
chr5:4711271-4714713 FORWARD
Length = 712
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Query: 167 YVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARV 226
+ P+PIQ + PIA+ RD++A A+TGSGKT + P G + +R+
Sbjct: 249 FSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIP--------GFMHLQRIHNDSRM 300
Query: 227 TYPSALILSPTRELSCQVR 245
P+ L+LSPTREL+ Q++
Sbjct: 301 G-PTILVLSPTRELATQIQ 318
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC
TRANSLATION INITIATION FACTOR 4A1); ATP-dependent
helicase/ translation initiation factor |
chr3:4592635-4594128 REVERSE
Length = 412
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 155 GMGLNENIKRCKYV----KPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGIL 210
MGL EN+ R Y KP+ IQ+ I G D++ AQ+G+GKTA FC +++ +
Sbjct: 43 AMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLD 102
Query: 211 RNGLKAVGSGRGRARVTYPSALILSPTRELSCQVRTV 247
+ ++ AL+L+PTREL+ Q+ V
Sbjct: 103 FSLIQC-------------QALVLAPTRELAQQIEKV 126
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC
TRANSLATION INITIATION FACTOR 4A1); ATP-dependent
helicase/ translation initiation factor |
chr3:4592635-4594094 REVERSE
Length = 402
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 155 GMGLNENIKRCKYV----KPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGIL 210
MGL EN+ R Y KP+ IQ+ I G D++ AQ+G+GKTA FC +++ +
Sbjct: 33 AMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLD 92
Query: 211 RNGLKAVGSGRGRARVTYPSALILSPTRELSCQVRTV 247
+ ++ AL+L+PTREL+ Q+ V
Sbjct: 93 FSLIQC-------------QALVLAPTRELAQQIEKV 116
>AT5G62190.1 | Symbols: PRH75 | PRH75; ATP-dependent helicase/
DEAD/H-box RNA helicase binding | chr5:24980542-24983879
REVERSE
Length = 671
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 158 LNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKA- 216
L E +K PIQ + + G DL+ A+TG GKT AF PI+ ++ K+
Sbjct: 107 LREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSK 166
Query: 217 --VGSGRGRARVTYPSALILSPTRELSCQV 244
+G GR PS L+L PTREL+ QV
Sbjct: 167 RKMGYGRS------PSVLVLLPTRELAKQV 190
>AT5G65900.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:26358328-26361244 FORWARD
Length = 633
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 148 TFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIR 207
TF + L ++IK + + T IQ AIP + G D++ A+TGSGKT AF P +
Sbjct: 155 TFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVE 214
Query: 208 GILRNGLK-AVGSGRGRARVTYPSALILSPTRELSCQ 243
+ R G+G L++ PTREL+ Q
Sbjct: 215 LLYRVKFTPRNGTG----------VLVICPTRELAIQ 241
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC
TRANSLATION INITIATION FACTOR 4A1); ATP-dependent
helicase/ translation initiation factor |
chr3:4592586-4594128 REVERSE
Length = 415
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 155 GMGLNENIKRCKYV----KPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGIL 210
MGL EN+ R Y KP+ IQ+ I G D++ AQ+G+GKTA FC +++ +
Sbjct: 43 AMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLD 102
Query: 211 RNGLKAVGSGRGRARVTYPSALILSPTRELSCQVRTV 247
+ ++ AL+L+PTREL+ Q+ V
Sbjct: 103 FSLIQC-------------QALVLAPTRELAQQIEKV 126
>AT1G71370.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:26897235-26899381 REVERSE
Length = 558
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 21/107 (19%)
Query: 149 FTEID--LGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPII 206
F+E+ L + E + R + TP+Q IP + +D++ A TGSGKT AF P I
Sbjct: 16 FSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 75
Query: 207 RGILRNGLKAVGSGRGRARVTYP------SALILSPTRELSCQVRTV 247
I R+ +YP +I+SPTRELS Q+ V
Sbjct: 76 EIIRRSN-------------SYPPKPHQVMGVIISPTRELSAQIHKV 109
>AT3G19760.1 | Symbols: | eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative | chr3:6863790-6866242 FORWARD
Length = 408
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 21/103 (20%)
Query: 145 PVDTFTEIDLGMGLNENIKRCKYV----KPTPIQKHAIPIAVAGRDLMACAQTGSGKTAA 200
P+ +F + MG+ E++ R Y KP+ IQ+ A+ + GRD++A AQ+G+GKT+
Sbjct: 33 PITSFND----MGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSM 88
Query: 201 FCFPIIRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQ 243
+ + + + + ALILSPTREL+ Q
Sbjct: 89 IALSVCQVVDTSSREV-------------QALILSPTRELATQ 118
>AT1G71280.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:26870262-26872152 REVERSE
Length = 465
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 21/107 (19%)
Query: 149 FTEID--LGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPII 206
F+E+ L + E + R + TP+Q IP + +D++ A TGSGKT AF P I
Sbjct: 17 FSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 76
Query: 207 RGILRNGLKAVGSGRGRARVTYP------SALILSPTRELSCQVRTV 247
I R+ +YP +I+SPTRELS Q+ V
Sbjct: 77 EIIRRSN-------------SYPPKPHQVMGVIISPTRELSAQIHKV 110
>AT3G18600.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:6399724-6403007 REVERSE
Length = 568
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 128 DAYEDIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDL 187
D ++ + I G I V TF +DL + IK + T IQ +I + G+D+
Sbjct: 71 DGEDEKNIVIVGKGIMTNV-TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDV 129
Query: 188 MACAQTGSGKTAAFCFPIIRGILRNGLK-AVGSGRGRARVTYPSALILSPTRELSCQVRT 246
+ A+TGSGKT AF P + + + G+G +++ PTREL+ Q +
Sbjct: 130 LGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG----------VIVICPTRELAIQTKN 179
Query: 247 V 247
V
Sbjct: 180 V 180
>AT1G72730.1 | Symbols: | eukaryotic translation initiation factor
4A, putative / eIF-4A, putative | chr1:27378040-27379593
REVERSE
Length = 414
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 113 DGSNNDPNE-NSAINFDAYEDIPVEITGSNIPAPVDTFTEIDLGMGLNENIKRCKYVKPT 171
DG+ DP + ++ +N E+ E +N D+F ++L L I + KP+
Sbjct: 7 DGTQYDPRQFDTKMNAILGEE-GEETFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPS 65
Query: 172 PIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSA 231
IQ+ I G D++ AQ+G+GKTA FC +++ + + A
Sbjct: 66 AIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-------------DISLVQCQA 112
Query: 232 LILSPTRELSCQVRTV 247
L+L+PTREL+ Q+ V
Sbjct: 113 LVLAPTRELAQQIEKV 128
>AT5G63630.1 | Symbols: | DEAD box RNA helicase, putative |
chr5:25472598-25475196 REVERSE
Length = 522
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 162 IKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGR 221
IK Y T +Q+ +PI + G+D++A A+TG+GKT AF P I ++++ + + R
Sbjct: 69 IKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKR 128
Query: 222 GRARVTYPS--ALILSPTRELSCQVRT 246
P AL++ PTREL+ Q T
Sbjct: 129 -------PPILALVICPTRELANQAAT 148
>AT3G02065.1 | Symbols: | DEAD/DEAH box helicase family protein |
chr3:359628-360734 FORWARD
Length = 368
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 176 HAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPSALILS 235
AIP A+ G+ L+A A TGSGKTA+F PII + S + P A++L+
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPII-----SRCTTYHSEHPSDQRRNPLAMVLA 56
Query: 236 PTRELSCQV 244
PTREL QV
Sbjct: 57 PTRELCVQV 65
>AT5G08620.1 | Symbols: STRS2, ATRH25 | STRS2 (STRESS RESPONSE
SUPPRESSOR 2); ATP-dependent helicase/ RNA binding |
chr5:2794540-2797548 FORWARD
Length = 563
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 9/75 (12%)
Query: 171 TPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGRGRARVTYPS 230
T +Q+ +P+ + G+D++A A+TG+GKT AF P I + +KA + R +P
Sbjct: 104 TVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAV----IKAPPASRDN---RHPP 156
Query: 231 --ALILSPTRELSCQ 243
L++ PTREL+CQ
Sbjct: 157 IIVLVVCPTRELACQ 171
>AT3G06980.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:2201531-2204662 FORWARD
Length = 781
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 148 TFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIR 207
TF EI + + +K + +P IQ A + G+ + Q+GSGKT A+ P+I+
Sbjct: 375 TFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQ 434
Query: 208 GILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQV 244
+ L+ G ++ P ++L PT EL+ QV
Sbjct: 435 RLREEELQ----GHSKSSPGCPRVIVLVPTAELASQV 467
>AT4G09730.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr4:6136333-6139510 FORWARD
Length = 621
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 146 VDTFTEIDLGMGLNENIKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPI 205
V+ F E+ L + ++ PT IQ IP + + ++ + TGSGKT A+ PI
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 206 IRGILRNGLKAVGSGRGRARVTYPSALILSPTRELSCQV 244
++ ++R +G + + P ++L PTRELS QV
Sbjct: 171 VQ-LMREDEANLGK---KTKPRRPRTVVLCPTRELSEQV 205
>AT5G08610.1 | Symbols: | DEAD box RNA helicase (RH26) |
chr5:2790341-2794059 FORWARD
Length = 850
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 162 IKRCKYVKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIIRGILRNGLKAVGSGR 221
IK + T +Q+ +PI + G+D++A A+TG+GKT AF P I ++++ + S
Sbjct: 397 IKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS-- 454
Query: 222 GRARVTYPSALILSPTRELSCQV 244
R L++ PTREL+ Q
Sbjct: 455 ---RQPPIIVLVVCPTRELASQA 474