Jatropha Genome Database

JcCB0305381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0305381.10 - phase: 0 
         (239 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17120.1 | Symbols: LYM2 | LYM2 (LYSM DOMAIN GPI-ANCHORED PRO...   201   5e-52
AT1G21880.1 | Symbols: LYM1 | LYM1 (LYSM DOMAIN GPI-ANCHORED PRO...    83   1e-16
AT1G21880.2 | Symbols: LYM1 | LYM1 (LYSM DOMAIN GPI-ANCHORED PRO...    83   1e-16
AT1G77630.1 | Symbols:  | peptidoglycan-binding LysM domain-cont...    75   2e-14

>AT2G17120.1 | Symbols: LYM2 | LYM2 (LYSM DOMAIN GPI-ANCHORED
           PROTEIN 2 PRECURSOR) | chr2:7459156-7460648 FORWARD
          Length = 350

 Score =  201 bits (510), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 103/193 (53%), Positives = 130/193 (67%), Gaps = 1/193 (0%)

Query: 27  FKCTQNPSSTCNSLVGYKTPNATTLSHLQNFFGVKDFNSLLGANNLPFFTPSKYTVKKDA 86
           F C+ + +STC SLVGY + NATTL ++Q  F VK+  S+LGANNLP  T     V  + 
Sbjct: 29  FNCSGS-TSTCQSLVGYSSKNATTLRNIQTLFAVKNLRSILGANNLPLNTSRDQRVNPNQ 87

Query: 87  VVKIPFPCKCSNGTGVSNKKPIYTIQRGDWLDHIARDVFLALVTYQQIVAVNNITDGNKI 146
           VV++P  C CSNGTGVSN+   YTI++ D L  +A ++F  LVTY++I  VN I D NKI
Sbjct: 88  VVRVPIHCSCSNGTGVSNRDIEYTIKKDDILSFVATEIFGGLVTYEKISEVNKIPDPNKI 147

Query: 147 LVGQELQIPLPCSCDDVGGEKVVHYGHVVESGSSLDLIAQEYGTTMTTLMTLNSIAKASS 206
            +GQ+  IPLPCSCD + GE VVHY HVV+ GSSL  IA ++GT  TTL  LN I   S 
Sbjct: 148 EIGQKFWIPLPCSCDKLNGEDVVHYAHVVKLGSSLGEIAAQFGTDNTTLAQLNGIIGDSQ 207

Query: 207 LMAGQVLDVPLKG 219
           L+A + LDVPLK 
Sbjct: 208 LLADKPLDVPLKA 220


>AT1G21880.1 | Symbols: LYM1 | LYM1 (LYSM DOMAIN GPI-ANCHORED
           PROTEIN 1 PRECURSOR) | chr1:7680689-7682048 FORWARD
          Length = 316

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 99/195 (50%), Gaps = 9/195 (4%)

Query: 29  CTQNPSSTCNSLVGYKTPNATTLSHLQNFFGVKDFNSLLGANNLPFFTP--SKYTVKKDA 86
           C+ N   TCN+L+GY       +S + + F V D  S+L AN +    P    + +    
Sbjct: 34  CSSN--DTCNALLGYTLYTDLKVSEVASLFQV-DPISILLANAIDISYPDVENHILPSKL 90

Query: 87  VVKIPFPCKCSNGTGVSNKKPIYTIQRGDWLDHIARDVFLALVTYQQIVAVNNITDGNKI 146
            +KIP  C C +G   S     Y  +  D L  IA  V+  LV+ +QI   N++ D + +
Sbjct: 91  FLKIPITCSCVDGIRKSVSTH-YKTRPSDNLGSIADSVYGGLVSAEQIQEANSVNDPSLL 149

Query: 147 LVGQELQIPLPCSCDDVGGEKV--VHYGHVVESGSSLDLIAQEYGTTMTTLMTLNSIAKA 204
            VG  L IPLPC+C +     +  V+  +VV+   +L  IA+ Y TT+T LM +N++  A
Sbjct: 150 DVGTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLVGIARRYSTTITDLMNVNAMG-A 208

Query: 205 SSLMAGQVLDVPLKG 219
             + +G +L VPL  
Sbjct: 209 PDVSSGDILAVPLSA 223


>AT1G21880.2 | Symbols: LYM1 | LYM1 (LYSM DOMAIN GPI-ANCHORED
           PROTEIN 1 PRECURSOR) | chr1:7680689-7682526 FORWARD
          Length = 416

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 99/195 (50%), Gaps = 9/195 (4%)

Query: 29  CTQNPSSTCNSLVGYKTPNATTLSHLQNFFGVKDFNSLLGANNLPFFTP--SKYTVKKDA 86
           C+ N   TCN+L+GY       +S + + F V D  S+L AN +    P    + +    
Sbjct: 34  CSSN--DTCNALLGYTLYTDLKVSEVASLFQV-DPISILLANAIDISYPDVENHILPSKL 90

Query: 87  VVKIPFPCKCSNGTGVSNKKPIYTIQRGDWLDHIARDVFLALVTYQQIVAVNNITDGNKI 146
            +KIP  C C +G   S     Y  +  D L  IA  V+  LV+ +QI   N++ D + +
Sbjct: 91  FLKIPITCSCVDGIRKSVST-HYKTRPSDNLGSIADSVYGGLVSAEQIQEANSVNDPSLL 149

Query: 147 LVGQELQIPLPCSCDDVGGEKV--VHYGHVVESGSSLDLIAQEYGTTMTTLMTLNSIAKA 204
            VG  L IPLPC+C +     +  V+  +VV+   +L  IA+ Y TT+T LM +N++  A
Sbjct: 150 DVGTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLVGIARRYSTTITDLMNVNAMG-A 208

Query: 205 SSLMAGQVLDVPLKG 219
             + +G +L VPL  
Sbjct: 209 PDVSSGDILAVPLSA 223


>AT1G77630.1 | Symbols:  | peptidoglycan-binding LysM
           domain-containing protein | chr1:29173726-29175387
           FORWARD
          Length = 423

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 7/186 (3%)

Query: 36  TCNSLVGYKTPNATTLSHLQNFFGVKDFNSLLGANNLPFFTP--SKYTVKKDAVVKIPFP 93
           TCNSL+GY       ++ + + F V D  S+L +N++    P    + +     +KIP  
Sbjct: 36  TCNSLLGYTLYTDLKVTEVASLFQV-DPVSMLLSNSIDISYPDVENHVLPAKLFLKIPIT 94

Query: 94  CKCSNGTGVSNKKPIYTIQRGDWLDHIARDVFLALVTYQQIVAVNNITDGNKILVGQELQ 153
           C C +G   S     Y  +  D L  IA  V+  LV+ +QI   N+ TD + + VG +L 
Sbjct: 95  CSCVDGIRKSLST-HYKTRTSDTLGSIADSVYGGLVSPEQIQVANSETDLSVLDVGTKLV 153

Query: 154 IPLPCSCDDVGGEKV--VHYGHVVESGSSLDLIAQEYGTTMTTLMTLNSIAKASSLMAGQ 211
           IPLPC+C +   E +  ++  +VV    ++  IA+ + T++T L  +N++  A  +  G 
Sbjct: 154 IPLPCACFNGTDESLPALYLSYVVRGIDTMAGIAKRFSTSVTDLTNVNAMG-APDINPGD 212

Query: 212 VLDVPL 217
           +L VPL
Sbjct: 213 ILAVPL 218