Jatropha Genome Database
- JcCB0305141.40
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0305141.40 - phase: 2 /pseudo/partial
(338 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05940.1 | Symbols: ATROPGEF5, ROPGEF5 | ROPGEF5 (ROP GUANINE... 221 7e-58
AT5G02010.1 | Symbols: ATROPGEF7, ROPGEF7 | ROPGEF7; Rho guanyl-... 164 9e-41
AT3G55660.1 | Symbols: ATROPGEF6, ROPGEF6 | ROPGEF6; Rho guanyl-... 142 2e-34
AT4G38430.1 | Symbols: ATROPGEF1, ROPGEF1 | ROPGEF1; Rho guanyl-... 119 2e-27
AT4G00460.2 | Symbols: ATROPGEF3, ROPGEF3 | Rho guanyl-nucleotid... 119 4e-27
AT1G01700.1 | Symbols: ATROPGEF2, ROPGEF2 | ROPGEF2; Rho guanyl-... 113 2e-25
AT2G45890.1 | Symbols: ATROPGEF4, ROPGEF4 | ROPGEF4 (RHO GUANYL-... 109 3e-24
AT3G24620.1 | Symbols: ATROPGEF8, ROPGEF8 | ROPGEF8; Rho guanyl-... 105 4e-23
AT4G13240.1 | Symbols: ATROPGEF9, ROPGEF9 | ROPGEF9; Rho guanyl-... 103 2e-22
AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11 | ROPGEF11 (RHO GUAN... 100 2e-21
AT1G79860.1 | Symbols: ATROPGEF12, ROPGEF12, MEE64 | ROPGEF12 (R... 92 5e-19
AT3G16130.1 | Symbols: ATROPGEF13, ROPGEF13 | ROPGEF13; Rho guan... 91 1e-18
AT5G19560.1 | Symbols: ATROPGEF10, ROPGEF10 | ROPGEF10 (ROP UANI... 89 3e-18
AT1G31650.1 | Symbols: ATROPGEF14, ROPGEF14 | ROPGEF14; Rho guan... 88 9e-18
>AT5G05940.1 | Symbols: ATROPGEF5, ROPGEF5 | ROPGEF5 (ROP GUANINE
NUCLEOTIDE EXCHANGE FACTOR 5); Rho guanyl-nucleotide
exchange factor | chr5:1786028-1788363 FORWARD
Length = 611
Score = 221 bits (562), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 137/281 (48%), Positives = 171/281 (60%), Gaps = 19/281 (6%)
Query: 76 KFLTHTWKHFQSLSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRS--TARSSWEIVK 133
KF + LS+E++ALDIANRVE++IYVWR+RV +K N S T + +WE+VK
Sbjct: 332 KFSAESLLDCLDLSSEHIALDIANRVEASIYVWRRRVQTKLGVNNNTSSTTPKLTWEMVK 391
Query: 134 DLMVDGDKXXXXXXXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLES 193
+LM GDK KQRFPSL+QT+LD SKIQ+NKD+GKSILESYSR LES
Sbjct: 392 ELMAAGDKRGLLVERSETLLRCLKQRFPSLTQTSLDISKIQWNKDIGKSILESYSRALES 451
Query: 194 LAFNIVARIDDLLYVDDLTKHSDK---LSVSSV-SVIAHKK-VSLPYSVPVSGTPYKXXX 248
LA NI+ARIDDLLYVDDLTK SD LS +V S+IAHKK V LPY + SGTPY+
Sbjct: 452 LASNIIARIDDLLYVDDLTKQSDDNNLLSSPAVSSIIAHKKVVPLPYLISASGTPYR-TS 510
Query: 249 XXXXXXXXXXLISPARGE-RTPFLHNITMSNNNNKPHRRGFGVKRVLTNYLGGDTKAKIC 307
+ISP +GE RTP+ T RG+GV+RVL NYLG ++K KIC
Sbjct: 511 FSTTPGFSPSMISPKKGERRTPYSSKDTNKIIEKGLPSRGYGVRRVLNNYLGMESKLKIC 570
Query: 308 GNQTDG---LCPNSNANGTE-------TAILHQNAPKYTVT 338
N +D N + E T++ + PKYTV+
Sbjct: 571 VNPSDNADTAVINQISKDVEEEKKRNSTSVHQKGPPKYTVS 611
>AT5G02010.1 | Symbols: ATROPGEF7, ROPGEF7 | ROPGEF7; Rho
guanyl-nucleotide exchange factor | chr5:383493-385698
FORWARD
Length = 546
Score = 164 bits (414), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 97/128 (75%), Gaps = 5/128 (3%)
Query: 88 LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVDGDKXXXXXX 147
LS+E+ A++IANRVES+IY+W KR +SKP T ++SWE+VK+LMVD DK
Sbjct: 314 LSSEHQAIEIANRVESSIYLWHKRTNSKPAT-----NTKTSWEMVKELMVDADKLELMAD 368
Query: 148 XXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLLY 207
KQRFP L QT LD SKIQ+NKD+GKSILESYSRVLESLAFNIVARIDDLL+
Sbjct: 369 RAESLLLSLKQRFPGLPQTALDMSKIQYNKDIGKSILESYSRVLESLAFNIVARIDDLLF 428
Query: 208 VDDLTKHS 215
VDDLT+HS
Sbjct: 429 VDDLTRHS 436
>AT3G55660.1 | Symbols: ATROPGEF6, ROPGEF6 | ROPGEF6; Rho
guanyl-nucleotide exchange factor |
chr3:20649051-20651290 REVERSE
Length = 579
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 132/241 (54%), Gaps = 34/241 (14%)
Query: 88 LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMV---DGDKXXX 144
LS+E +++ANRVE+++YVWR+R HS+ RST+ IVK++M+ DGDK
Sbjct: 345 LSSELAVVEMANRVEASMYVWRRRAHSRHLISLYRSTSTRWGMIVKEMMMHQTDGDKREI 404
Query: 145 XXXXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDD 204
KQRFP L QT LDTSKIQ+NKDVGKSILESYSRVLESLA++I RI++
Sbjct: 405 FAERAESLLIRLKQRFPGLRQTALDTSKIQYNKDVGKSILESYSRVLESLAYSIGVRIEE 464
Query: 205 LLYVDDLTKHS---------------DKLSVSSVSVIAHKKVSLP--YSVPVSG--TPYK 245
+L++DD++K K + S S +K+S P +SV SG TPY+
Sbjct: 465 VLFMDDISKDDGDGDDDSCSDKLRLLSKEAASGGSGSLREKLSAPSLFSVSFSGTSTPYR 524
Query: 246 XXXXXXXX--XXXXXLISPAR----GERTPFLHNITMSNNNNKPHRRGFGVKRVLTNYLG 299
LISP GER PFL + N R GFG K+ L NYL
Sbjct: 525 TLSFSASTPSYSPMPLISPINGGRGGERAPFL------SGRNIRERCGFGPKKALANYLR 578
Query: 300 G 300
G
Sbjct: 579 G 579
>AT4G38430.1 | Symbols: ATROPGEF1, ROPGEF1 | ROPGEF1; Rho
guanyl-nucleotide exchange factor/ protein binding |
chr4:17986643-17988659 FORWARD
Length = 548
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 14/177 (7%)
Query: 76 KFLTHTWKHFQSLSTENVALDIANRVESAIYVWRK---RVHSKPPTYPNRSTARSSWE-I 131
KF LS+E+ L+IANR+E+A++VWR+ R H K SSW
Sbjct: 320 KFSPECLLDCLDLSSEHQTLEIANRIEAAVHVWRQKNGRRHKK-----QAKLKLSSWGGK 374
Query: 132 VKDLMVDGDKXXXXXXXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVL 191
VK L+ D ++ + RFP L QTTLD +KIQ+NKDVG+SILESYSRV+
Sbjct: 375 VKGLVNDNERNDFLVQRAETLLQSLRIRFPGLPQTTLDMNKIQYNKDVGQSILESYSRVM 434
Query: 192 ESLAFNIVARIDDLLYVDDLTKHS----DKLSVSSVSVIAHKKVSLPYSVPVSGTPY 244
ES+AFNI ARIDD+LYVDD + S + LS+ S++ + +K S P G+P+
Sbjct: 435 ESMAFNITARIDDVLYVDDAMRRSISVTESLSLFSINGLNPQKAFSVQSSP-HGSPF 490
>AT4G00460.2 | Symbols: ATROPGEF3, ROPGEF3 | Rho guanyl-nucleotide
exchange factor | chr4:211146-213094 REVERSE
Length = 473
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 86/132 (65%), Gaps = 11/132 (8%)
Query: 88 LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVDG---DKXXX 144
+S+E+ A+ +A+RVE+++Y WR++ S +++SW +VKDLM DK
Sbjct: 350 ISSEHEAVQLADRVEASMYTWRRK--------SCLSNSKNSWNMVKDLMSTTERTDKNYV 401
Query: 145 XXXXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDD 204
KQR+P LSQT+LD KIQ+NKDVGK++LESYSRVLE LAFNIVA IDD
Sbjct: 402 MAERAETLLFCLKQRYPELSQTSLDICKIQYNKDVGKAVLESYSRVLEGLAFNIVAWIDD 461
Query: 205 LLYVDDLTKHSD 216
+LYVD + S+
Sbjct: 462 VLYVDKTMRGSE 473
>AT1G01700.1 | Symbols: ATROPGEF2, ROPGEF2 | ROPGEF2; Rho
guanyl-nucleotide exchange factor/ protein binding |
chr1:259495-261474 REVERSE
Length = 485
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 79/123 (64%), Gaps = 11/123 (8%)
Query: 90 TENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMV---DGDKXXXXX 146
+E+ AL +A+RVE+++Y WR++ + ++SSW +VKDLM DK
Sbjct: 364 SEHEALQLADRVEASMYTWRRKA--------CLNNSKSSWNMVKDLMSITERSDKNYVLA 415
Query: 147 XXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLL 206
KQR+P LSQT+LD KI NKDVGK++LESYSRVLE LAFNIVA IDD+L
Sbjct: 416 ERAESLLFCLKQRYPELSQTSLDICKIHCNKDVGKAVLESYSRVLEGLAFNIVAWIDDVL 475
Query: 207 YVD 209
YVD
Sbjct: 476 YVD 478
>AT2G45890.1 | Symbols: ATROPGEF4, ROPGEF4 | ROPGEF4 (RHO
GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4); Rho
guanyl-nucleotide exchange factor |
chr2:18883540-18885440 FORWARD
Length = 463
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 87/137 (63%), Gaps = 19/137 (13%)
Query: 88 LSTENVALDIANRVESAIYVWRKRV----HSKPPTYPNRSTARSSWEIVKDLMVDGD--- 140
+++E+ AL++A++VE+++ WR++ HSK SSW+++KD+ D D
Sbjct: 337 ITSEHEALELADKVEASLVTWRRKTGGLTHSK-----------SSWDMMKDISGDADRGN 385
Query: 141 -KXXXXXXXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIV 199
K KQR+P LSQT+LD KIQFN+DVGK++LESYSRVLE LA+N+V
Sbjct: 386 DKNHILAARARSLLFCLKQRYPELSQTSLDICKIQFNRDVGKAVLESYSRVLEGLAYNVV 445
Query: 200 ARIDDLLYVDDLTKHSD 216
+ IDD+LYVD ++ D
Sbjct: 446 SWIDDVLYVDRTVRNRD 462
>AT3G24620.1 | Symbols: ATROPGEF8, ROPGEF8 | ROPGEF8; Rho
guanyl-nucleotide exchange factor | chr3:8980695-8982793
REVERSE
Length = 523
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 88/143 (61%), Gaps = 18/143 (12%)
Query: 75 WKFLTHTW---KHFQSL---STENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSS 128
+K +T W + F ++ STE+ LD+ NR+E+++ +W++++H+K +SS
Sbjct: 302 YKSITEEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTK--------DTKSS 353
Query: 129 WEIVKDLMVDGDKXXXXXXXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYS 188
W L +K KQ+FP L Q++LD SKIQFNKDVG+++LESYS
Sbjct: 354 WGSAVSL----EKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYS 409
Query: 189 RVLESLAFNIVARIDDLLYVDDL 211
R+LESLA+ +++RI+D+LY D L
Sbjct: 410 RILESLAYTVMSRIEDVLYTDTL 432
>AT4G13240.1 | Symbols: ATROPGEF9, ROPGEF9 | ROPGEF9; Rho
guanyl-nucleotide exchange factor | chr4:7680153-7682414
FORWARD
Length = 517
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 85/145 (58%), Gaps = 18/145 (12%)
Query: 75 WKFLTHTW---KHFQS---LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSS 128
+K +T W + F S LSTE+ LD+ NR+E++I +W++++H K +SS
Sbjct: 291 YKSITEEWFDPEQFLSTLDLSTEHKVLDVKNRIEASIVIWKRKLHLK--------DNKSS 342
Query: 129 WEIVKDLMVDGDKXXXXXXXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYS 188
W L +K KQ+FP L Q++LD SKIQ+NKDVG ++LESYS
Sbjct: 343 WGSAVSL----EKRELFEERAETILVLLKQKFPGLPQSSLDISKIQYNKDVGHAVLESYS 398
Query: 189 RVLESLAFNIVARIDDLLYVDDLTK 213
R+LESL + ++RIDD+LY D L +
Sbjct: 399 RILESLGYTEMSRIDDVLYADSLAR 423
>AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11 | ROPGEF11 (RHO
GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11); Rho
guanyl-nucleotide exchange factor |
chr1:19455766-19459235 REVERSE
Length = 607
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 77/127 (60%), Gaps = 12/127 (9%)
Query: 88 LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVDGDKXXXXXX 147
LS+E+ LD+ NR+E++I +W++++ K P ST V +K
Sbjct: 401 LSSEHKILDLKNRIEASIVIWKRKMVQKDTKSPWGST------------VSIEKREQFEE 448
Query: 148 XXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLLY 207
KQ FP +SQ++LD SKIQFN+DVG +ILESYSRVLESLA +++RI+D+LY
Sbjct: 449 RAETILLLLKQGFPGISQSSLDISKIQFNRDVGLAILESYSRVLESLAHTVMSRIEDVLY 508
Query: 208 VDDLTKH 214
D LT+
Sbjct: 509 ADQLTQE 515
>AT1G79860.1 | Symbols: ATROPGEF12, ROPGEF12, MEE64 | ROPGEF12 (RHO
GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12); Rho
guanyl-nucleotide exchange factor |
chr1:30042172-30044092 REVERSE
Length = 515
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 79/122 (64%), Gaps = 10/122 (8%)
Query: 88 LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVDGDKXXXXXX 147
+S+E+ +D+ NR+E++I +W++++ K N+S+A W L +K
Sbjct: 325 MSSEHKIVDLKNRIEASIIIWKRKMVYKD----NKSSA--PWASGVSL----EKREVFEE 374
Query: 148 XXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLLY 207
KQR+P +SQ++LD SKIQFN+DVG+++LESYSR+LESLA+ +++RIDD+L
Sbjct: 375 RAETILLILKQRYPGISQSSLDISKIQFNEDVGQAVLESYSRILESLAYTVLSRIDDVLE 434
Query: 208 VD 209
D
Sbjct: 435 AD 436
>AT3G16130.1 | Symbols: ATROPGEF13, ROPGEF13 | ROPGEF13; Rho
guanyl-nucleotide exchange factor | chr3:5466246-5468512
FORWARD
Length = 576
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 85/139 (61%), Gaps = 11/139 (7%)
Query: 88 LSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVDGDKXXXXXX 147
LS+E+ LD+ N+ E+++ +W++++ N+S+ S W + DK
Sbjct: 364 LSSEHKILDLKNKFEASVVIWQRKIVQ----IDNKSS--SPWST----NLSMDKRQQLEE 413
Query: 148 XXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLLY 207
KQ FP +SQ+TLD SKIQFN+D+G +I+ESYSR+LESLA +++RI+D+L
Sbjct: 414 RAATILQLIKQEFPGISQSTLDISKIQFNRDIGLAIVESYSRILESLAHTVMSRIEDVLE 473
Query: 208 VDDLTKHSDKLSVSSVSVI 226
D LT++ + L++ + ++
Sbjct: 474 ADQLTQNPE-LAMCKIHIV 491
>AT5G19560.1 | Symbols: ATROPGEF10, ROPGEF10 | ROPGEF10 (ROP UANINE
NUCLEOTIDE EXCHANGE FACTOR 10); Rho guanyl-nucleotide
exchange factor | chr5:6603291-6606130 FORWARD
Length = 493
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 10/129 (7%)
Query: 85 FQSLSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVDGDKXXX 144
F LSTE+ LD+ NR+E+++ +W++++ K +S W L +K
Sbjct: 277 FLDLSTEHKVLDLKNRIEASMVIWKRKMCQK------EKDGKSQWGSTVSL----EKREL 326
Query: 145 XXXXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDD 204
KQ+FP + Q++L+ SKI+ NKDVG++ILESYSRVLESLA I++RI+D
Sbjct: 327 FEVRAETILVMLKQQFPGIPQSSLEVSKIKNNKDVGQAILESYSRVLESLASKIMSRIED 386
Query: 205 LLYVDDLTK 213
+L D L +
Sbjct: 387 VLEADRLVQ 395
>AT1G31650.1 | Symbols: ATROPGEF14, ROPGEF14 | ROPGEF14; Rho
guanyl-nucleotide exchange factor |
chr1:11326474-11329767 REVERSE
Length = 576
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 87 SLSTENVALDIANRVESAIYVWRKRVHSKPPTYPNRSTARSSWEIVKDLMVDGDKXXXXX 146
+L TE+ AL+ N++ESA++ W++R+ + +S R+SW KD + + +
Sbjct: 370 NLGTEHAALETVNKLESAMFAWKERITEQGSN--GKSPVRASWSFAKDPLSEIGRNESLL 427
Query: 147 XXXXXXXXXXKQRFPSLSQTTLDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLL 206
K + P+L + LD +KIQ++KD+G ++LE+YSR L +LAF I++R+ ++L
Sbjct: 428 NRAEALRTQIKSKHPNLPHSFLDATKIQYDKDIGHAVLEAYSRTLANLAFRILSRMGEIL 487
Query: 207 YVDDLT 212
D L+
Sbjct: 488 KEDSLS 493