Jatropha Genome Database

JcCB0305141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0305141.10 - phase: 0 /partial
         (50 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05950.1 | Symbols: MEE60 | MEE60 (maternal effect embryo arr...    88   1e-18
AT3G07510.2 | Symbols:  | unknown protein | chr3:2393895-2394464...    46   4e-06
AT3G07510.1 | Symbols:  | unknown protein | chr3:2393895-2394464...    46   4e-06
AT3G46890.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    46   6e-06

>AT5G05950.1 | Symbols: MEE60 | MEE60 (maternal effect embryo
          arrest 60) | chr5:1788814-1789341 FORWARD
          Length = 175

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/45 (86%), Positives = 44/45 (97%)

Query: 1  MTTSIHITALDGIINVNSLFTLAVFLGLAWNPSDPNNSLITDPTC 45
          MTTSIHITALDGI+NVNSLFTLAVF+GLAWNP+DP+NSL+TDP C
Sbjct: 1  MTTSIHITALDGIVNVNSLFTLAVFIGLAWNPTDPDNSLVTDPNC 45


>AT3G07510.2 | Symbols:  | unknown protein | chr3:2393895-2394464
          REVERSE
          Length = 189

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 34/45 (75%), Gaps = 1/45 (2%)

Query: 5  IHITALDGIINVNSLFTLAVFLGLAWNPSDPNNSLITDPTCAASS 49
          +H++ALDG++NVNSLFT+AVF+GL+   +   +SL    +C AS+
Sbjct: 26 VHVSALDGLVNVNSLFTIAVFVGLSL-ATPGQHSLEQRSSCDASA 69


>AT3G07510.1 | Symbols:  | unknown protein | chr3:2393895-2394464
          REVERSE
          Length = 189

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 34/45 (75%), Gaps = 1/45 (2%)

Query: 5  IHITALDGIINVNSLFTLAVFLGLAWNPSDPNNSLITDPTCAASS 49
          +H++ALDG++NVNSLFT+AVF+GL+   +   +SL    +C AS+
Sbjct: 26 VHVSALDGLVNVNSLFTIAVFVGLSL-ATPGQHSLEQRSSCDASA 69


>AT3G46890.1 | Symbols:  | FUNCTIONS IN: molecular_function
          unknown; INVOLVED IN: biological_process unknown;
          LOCATED IN: cellular_component unknown; BEST
          Arabidopsis thaliana protein match is: MEE60 (maternal
          effect embryo arrest 60) (TAIR:AT5G05950.1); Has 61
          Blast hits to 61 proteins in 8 species: Archae - 0;
          Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61;
          Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
          | chr3:17266416-17267030 REVERSE
          Length = 204

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/27 (77%), Positives = 26/27 (96%)

Query: 2  TTSIHITALDGIINVNSLFTLAVFLGL 28
          TT IH+TA+DGI+NVNSLF+LA+FLGL
Sbjct: 18 TTLIHVTAIDGIVNVNSLFSLALFLGL 44