Jatropha Genome Database

JcCB0304451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0304451.10 - phase: 1 /partial/short
         (47 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44050.1 | Symbols: COS1 | COS1 (COI1 SUPPRESSOR1); 6,7-dimet...    57   2e-09

>AT2G44050.1 | Symbols: COS1 | COS1 (COI1 SUPPRESSOR1);
           6,7-dimethyl-8-ribityllumazine synthase |
           chr2:18224304-18225917 FORWARD
          Length = 227

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/47 (57%), Positives = 29/47 (61%)

Query: 1   VPCIFGVLTCDDMDQXXXXXXXXXXXXXXXXXXTAIEMASLFEHHLK 47
           VPCIFGVLTC+DMDQ                  TA+EMASLFEHHLK
Sbjct: 181 VPCIFGVLTCEDMDQALNRSGGKAGNKGAETALTALEMASLFEHHLK 227