Jatropha Genome Database

JcCB0304081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0304081.10 + phase: 0 
         (135 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48680.1 | Symbols: GAMMA CAL2 | GAMMA CAL2 (GAMMA CARBONIC A...   193   3e-50
AT5G63510.1 | Symbols: GAMMA CAL1 | GAMMA CAL1 (GAMMA CARBONIC A...   191   1e-49
AT5G66510.1 | Symbols: GAMMA CA3 | GAMMA CA3 (GAMMA CARBONIC ANH...    64   3e-11
AT1G47260.1 | Symbols: APFI, GAMMA CA2 | GAMMA CA2 (GAMMA CARBON...    61   2e-10
AT1G19580.1 | Symbols: GAMMA CA1 | GAMMA CA1 (GAMMA CARBONIC ANH...    58   1e-09
AT5G66510.2 | Symbols: GAMMA CA3 | GAMMA CA3 (GAMMA CARBONIC ANH...    55   1e-08

>AT3G48680.1 | Symbols: GAMMA CAL2 | GAMMA CAL2 (GAMMA CARBONIC
           ANHYDRASE-LIKE 2); transferase | chr3:18035107-18036773
           FORWARD
          Length = 256

 Score =  193 bits (490), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/134 (73%), Positives = 113/134 (84%), Gaps = 12/134 (8%)

Query: 1   MATALARISRKALTSTISPQRHLLNRSFSAEAST----------KSITPSPDRVKWDYRG 50
           MAT+LARIS++++TS +S   +L+ R F+AEA              +TPSPDRVKWDYRG
Sbjct: 1   MATSLARISKRSITSAVS--SNLIRRYFAAEAVAVATTETPKPKSQVTPSPDRVKWDYRG 58

Query: 51  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQ 110
           QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTV DG+SVW+G+VLRGDLNKITVGFCSNVQ
Sbjct: 59  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQ 118

Query: 111 ERCVVHAAWNSPTG 124
           ERCVVHAAW+SPTG
Sbjct: 119 ERCVVHAAWSSPTG 132


>AT5G63510.1 | Symbols: GAMMA CAL1 | GAMMA CAL1 (GAMMA CARBONIC
           ANHYDRASE LIKE 1); carbonate dehydratase |
           chr5:25424054-25425612 FORWARD
          Length = 252

 Score =  191 bits (484), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/134 (70%), Positives = 111/134 (82%), Gaps = 16/134 (11%)

Query: 1   MATALARISRKALTSTISPQRHLLNRSFSAEASTK----------SITPSPDRVKWDYRG 50
           MAT++AR+SR+ +TS      +L+ R F+AEA+            +++PS DRVKWDYRG
Sbjct: 1   MATSIARLSRRGVTS------NLIRRCFAAEAALARKTELPKPQFTVSPSTDRVKWDYRG 54

Query: 51  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQ 110
           QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTV DG+SVW+G+VLRGDLNKITVGFCSNVQ
Sbjct: 55  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQ 114

Query: 111 ERCVVHAAWNSPTG 124
           ERCVVHAAW+SPTG
Sbjct: 115 ERCVVHAAWSSPTG 128


>AT5G66510.1 | Symbols: GAMMA CA3 | GAMMA CA3 (GAMMA CARBONIC
           ANHYDRASE 3); carbonate dehydratase |
           chr5:26550016-26551496 REVERSE
          Length = 258

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 51  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQ 110
            R ++ +    P V   A+VAPN  L+G V V  G+S+W G VLRGD N I+VG  +N+Q
Sbjct: 42  HRTLMNVFDKTPNVDKGAFVAPNASLSGDVHVGRGSSIWYGCVLRGDANSISVGAGTNIQ 101

Query: 111 ERCVVHAAWNSPTG 124
           +  +VH A  + +G
Sbjct: 102 DNALVHVAKTNLSG 115


>AT1G47260.1 | Symbols: APFI, GAMMA CA2 | GAMMA CA2 (GAMMA CARBONIC
           ANHYDRASE 2); carbonate dehydratase |
           chr1:17321384-17323347 REVERSE
          Length = 278

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query: 36  SITPSPDRVKWDYRGQRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLR 95
           S+     R++      R ++ +    P V  D +VAP+  + G V +  G+S+W G VLR
Sbjct: 27  SLLQGSHRIEEHLSRHRTLMNVFDKSPLVDKDVFVAPSASVIGDVQIGKGSSIWYGCVLR 86

Query: 96  GDLNKITVGFCSNVQERCVVHAAWNSPTG 124
           GD+N I+VG  +N+Q+  +VH A  + +G
Sbjct: 87  GDVNNISVGSGTNIQDNTLVHVAKTNISG 115


>AT1G19580.1 | Symbols: GAMMA CA1 | GAMMA CA1 (GAMMA CARBONIC
           ANHYDRASE 1); carbonate dehydratase |
           chr1:6774937-6777092 FORWARD
          Length = 275

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 47/74 (63%)

Query: 51  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRGDLNKITVGFCSNVQ 110
            R ++ +    P V  +A+VAP+  + G V +  G+S+W G VLRGD+N ++VG  +N+Q
Sbjct: 42  HRTLMNVFDKAPIVDKEAFVAPSASVIGDVHIGRGSSIWYGCVLRGDVNTVSVGSGTNIQ 101

Query: 111 ERCVVHAAWNSPTG 124
           +  +VH A ++ +G
Sbjct: 102 DNSLVHVAKSNLSG 115


>AT5G66510.2 | Symbols: GAMMA CA3 | GAMMA CA3 (GAMMA CARBONIC
           ANHYDRASE 3); carbonate dehydratase |
           chr5:26550016-26551496 REVERSE
          Length = 269

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 11/85 (12%)

Query: 51  QRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLR-----------GDLN 99
            R ++ +    P V   A+VAPN  L+G V V  G+S+W G VLR           GD N
Sbjct: 42  HRTLMNVFDKTPNVDKGAFVAPNASLSGDVHVGRGSSIWYGCVLRDIPFDLMTDSAGDAN 101

Query: 100 KITVGFCSNVQERCVVHAAWNSPTG 124
            I+VG  +N+Q+  +VH A  + +G
Sbjct: 102 SISVGAGTNIQDNALVHVAKTNLSG 126