Jatropha Genome Database

JcCB0302981.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0302981.20 + phase: 0 /partial
         (178 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64390.1 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); RNA binding...    72   1e-13
AT5G64390.2 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); RNA binding...    72   2e-13
AT2G22600.1 | Symbols:  | KH domain-containing protein | chr2:95...    48   4e-06

>AT5G64390.1 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); RNA binding /
           nucleic acid binding | chr5:25743442-25747380 FORWARD
          Length = 857

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 65/131 (49%), Gaps = 15/131 (11%)

Query: 50  GHVSFRLLCHASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXX 109
           GH +FRLLC  S              QLQQ TGAKIR+EE P  SPDR            
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104

Query: 110 XXXXXNDGSGR-------QEIDVSKAQEALVRVFERILTVAAESDGIGVAGGVVSCRLLG 162
                 + +G        +E++VSKAQ AL++VFE +L   A+SD        V CRLL 
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFE-LLAAEADSD-------TVVCRLLT 156

Query: 163 EAKQVGSVIGK 173
           E+   G+VIGK
Sbjct: 157 ESSHAGAVIGK 167


>AT5G64390.2 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); RNA binding /
           nucleic acid binding | chr5:25743442-25746742 FORWARD
          Length = 824

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 65/131 (49%), Gaps = 15/131 (11%)

Query: 50  GHVSFRLLCHASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXX 109
           GH +FRLLC  S              QLQQ TGAKIR+EE P  SPDR            
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104

Query: 110 XXXXXNDGSGR-------QEIDVSKAQEALVRVFERILTVAAESDGIGVAGGVVSCRLLG 162
                 + +G        +E++VSKAQ AL++VFE +L   A+SD        V CRLL 
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFE-LLAAEADSD-------TVVCRLLT 156

Query: 163 EAKQVGSVIGK 173
           E+   G+VIGK
Sbjct: 157 ESSHAGAVIGK 167


>AT2G22600.1 | Symbols:  | KH domain-containing protein |
           chr2:9596617-9599050 FORWARD
          Length = 632

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 55/132 (41%), Gaps = 13/132 (9%)

Query: 53  SFRLLCHASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXXXXX 112
           + R++CHAS              +L+++TG KI  E +PV   D                
Sbjct: 26  AIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCE-SPVNGSDHWVVFIVGSTAVNQSI 84

Query: 113 XXND-----GSGRQE----IDVSKAQEALVRVFERILTVAAESDGIGVAGG---VVSCRL 160
              D       G  E     +VS AQ AL+RV ER   V A  DG GV  G      C +
Sbjct: 85  LLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCGI 144

Query: 161 LGEAKQVGSVIG 172
           L +  Q+G+V+G
Sbjct: 145 LADRNQIGAVLG 156