Jatropha Genome Database

JcCB0302351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0302351.10 - phase: 1 /partial
         (151 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69010.1 | Symbols: BIM2 | BIM2 (BES1-interacting Myc-like pr...    72   1e-13
AT5G08130.2 | Symbols: BIM1 | BIM1; DNA binding / protein bindin...    66   1e-11
AT5G08130.3 | Symbols:  | BIM1; DNA binding / protein binding / ...    65   1e-11
AT5G08130.1 | Symbols: BIM1 | BIM1; DNA binding / protein bindin...    65   1e-11
AT5G38860.1 | Symbols: BIM3 | BIM3 (BES1-interacting Myc-like pr...    50   6e-07

>AT1G69010.1 | Symbols: BIM2 | BIM2 (BES1-interacting Myc-like
           protein 2); DNA binding / transcription factor |
           chr1:25941804-25943599 FORWARD
          Length = 311

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 50/66 (75%), Gaps = 5/66 (7%)

Query: 42  CTSDGAVAADKLKEQELSIEGGTINISSVYSQGLLNTLTQALQSSGVDLSLASISVQIQL 101
            TSDG   ++     +L IEGGTI+ISS YS  LL++LTQALQ++G+DLS A +SVQI L
Sbjct: 213 ATSDGLGQSN-----DLVIEGGTISISSAYSHELLSSLTQALQNAGIDLSQAKLSVQIDL 267

Query: 102 GKRANR 107
           GKRAN+
Sbjct: 268 GKRANQ 273


>AT5G08130.2 | Symbols: BIM1 | BIM1; DNA binding / protein binding /
           transcription factor | chr5:2606655-2609571 REVERSE
          Length = 529

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 15/125 (12%)

Query: 28  IANQPQPQSHNTRLCTSDGAVAADKLKEQELSIEG----GTINISSVYSQGLLNTLTQAL 83
           IA  P PQ H  R+ +S+    +   + Q+   +     G I ISSVYSQGL+ TL +AL
Sbjct: 414 IAGNPVPQFH-ARVASSEAVEPSPSSRSQKEEEDEEVLEGNIRISSVYSQGLVKTLREAL 472

Query: 84  QSSGVDLSLASISVQIQLGKRANRRPILPTSIVKDNEVPCSNQGTTRPRVSDGEESGQAL 143
           ++SGVDL+ ASISV+I+L K+++      +S  KD+EV    +  +R R +D  +  +  
Sbjct: 473 ENSGVDLTKASISVEIELAKQSS------SSSFKDHEV---REPVSRTR-NDNVKQTRKP 522

Query: 144 KKLKT 148
           K+LKT
Sbjct: 523 KRLKT 527


>AT5G08130.3 | Symbols:  | BIM1; DNA binding / protein binding /
           transcription factor | chr5:2606655-2608652 REVERSE
          Length = 408

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 15/125 (12%)

Query: 28  IANQPQPQSHNTRLCTSDGAVAADKLKEQELSIEG----GTINISSVYSQGLLNTLTQAL 83
           IA  P PQ H  R+ +S+    +   + Q+   +     G I ISSVYSQGL+ TL +AL
Sbjct: 293 IAGNPVPQFH-ARVASSEAVEPSPSSRSQKEEEDEEVLEGNIRISSVYSQGLVKTLREAL 351

Query: 84  QSSGVDLSLASISVQIQLGKRANRRPILPTSIVKDNEVPCSNQGTTRPRVSDGEESGQAL 143
           ++SGVDL+ ASISV+I+L K+++      +S  KD+EV    +  +R R +D  +  +  
Sbjct: 352 ENSGVDLTKASISVEIELAKQSS------SSSFKDHEV---REPVSRTR-NDNVKQTRKP 401

Query: 144 KKLKT 148
           K+LKT
Sbjct: 402 KRLKT 406


>AT5G08130.1 | Symbols: BIM1 | BIM1; DNA binding / protein binding /
           transcription factor | chr5:2606655-2608652 REVERSE
          Length = 409

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 15/125 (12%)

Query: 28  IANQPQPQSHNTRLCTSDGAVAADKLKEQELSIEG----GTINISSVYSQGLLNTLTQAL 83
           IA  P PQ H  R+ +S+    +   + Q+   +     G I ISSVYSQGL+ TL +AL
Sbjct: 294 IAGNPVPQFH-ARVASSEAVEPSPSSRSQKEEEDEEVLEGNIRISSVYSQGLVKTLREAL 352

Query: 84  QSSGVDLSLASISVQIQLGKRANRRPILPTSIVKDNEVPCSNQGTTRPRVSDGEESGQAL 143
           ++SGVDL+ ASISV+I+L K+++      +S  KD+EV    +  +R R +D  +  +  
Sbjct: 353 ENSGVDLTKASISVEIELAKQSS------SSSFKDHEV---REPVSRTR-NDNVKQTRKP 402

Query: 144 KKLKT 148
           K+LKT
Sbjct: 403 KRLKT 407


>AT5G38860.1 | Symbols: BIM3 | BIM3 (BES1-interacting Myc-like
           protein 3); DNA binding / transcription factor |
           chr5:15559083-15560911 FORWARD
          Length = 298

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 59  SIEGGTINISSVYSQGLLNTLTQALQSSGVDLSLASISVQIQLGKRANRRPILPTSIVKD 118
           S E  + ++S+V SQ +LNTLT+AL+SSGV++S   ISVQ+ L KR +R   +     +D
Sbjct: 207 SDEKTSASLSTVCSQRVLNTLTEALKSSGVNMSETMISVQLSLRKREDREYSVAAFASED 266

Query: 119 N 119
           N
Sbjct: 267 N 267