Jatropha Genome Database

JcCB0301651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0301651.10 + phase: 0 /partial
         (212 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18540.1 | Symbols:  | unknown protein | chr4:10221203-102230...   192   1e-49

>AT4G18540.1 | Symbols:  | unknown protein | chr4:10221203-10223028
           REVERSE
          Length = 520

 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/231 (51%), Positives = 142/231 (61%), Gaps = 23/231 (9%)

Query: 3   SPVRFSSCRGVAFEIKPHSNPFTLSPVPE--------EPTXXXXXXXXXXXXXXXKVFPS 54
           S VRFSSCRGVAFEIKP++NPF +    +        E T               KV PS
Sbjct: 5   STVRFSSCRGVAFEIKPNANPFAVVTTDQNRNVNAEREGTSSRFRLPWDFMRNASKVVPS 64

Query: 55  TTIQRSVSRASSHFCXXXXXXXXXXXXXXXXXXGKQEEIKEFTPNP---------LPSAS 105
           + I+ S+SRASSHFC                   ++  IKE                SAS
Sbjct: 65  S-IEHSMSRASSHFCDLDPDNDDEEEEKDDIFYLEEGGIKEGNEEHNETEEKAMLASSAS 123

Query: 106 KR----EQAPKPARKPESRLSVILLDQGLFTVYKRLFVVSLTLNITALVLAATSHFPYAR 161
           K     +Q P P ++P SRLS+ILLDQGLFTVYK LFV+SL+LN+ ALVLAAT +F YAR
Sbjct: 124 KHSEKPQQPPIPKKRP-SRLSIILLDQGLFTVYKHLFVLSLSLNVLALVLAATGNFAYAR 182

Query: 162 NRAALFSIANILALTLCRSEAFLRVVFWLAVKVLGRSWIPLPIKTATTSLL 212
           NRAALFSIANILAL LCRSEAFLR+VF+L VK+LG S++PL IK A T+LL
Sbjct: 183 NRAALFSIANILALILCRSEAFLRLVFYLTVKLLGHSFVPLRIKIAVTALL 233