Jatropha Genome Database

JcCB0298051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0298051.10 + phase: 1 /partial
         (129 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23660.2 | Symbols: AtPPT1 | AtPPT1 (Arabidopsis thaliana pol...   160   2e-40
AT4G23660.1 | Symbols: AtPPT1 | AtPPT1 (Arabidopsis thaliana pol...   160   2e-40

>AT4G23660.2 | Symbols: AtPPT1 | AtPPT1 (Arabidopsis thaliana
           polyprenyltransferase 1); 4-hydroxybenzoate
           nonaprenyltransferase | chr4:12328086-12331359 REVERSE
          Length = 407

 Score =  160 bits (405), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/109 (73%), Positives = 93/109 (85%)

Query: 1   SLDLAVVLPLYVAGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEWITGFGIAC 60
           S+  ++VLPLY++GV WTLVYDTIYAHQDKEDD+KVGVKSTALRFGD+TK W+TGFG A 
Sbjct: 280 SIAPSIVLPLYLSGVCWTLVYDTIYAHQDKEDDVKVGVKSTALRFGDNTKLWLTGFGTAS 339

Query: 61  ISSLALSGVSADLGWPFYAFLAAASGHLTWQIWTVDLSSRADCNKKYVN 109
           I  LALSG SADLGW +YA LAAASG L WQI T DLSS ADC++K+V+
Sbjct: 340 IGFLALSGFSADLGWQYYASLAAASGQLGWQIGTADLSSGADCSRKFVS 388


>AT4G23660.1 | Symbols: AtPPT1 | AtPPT1 (Arabidopsis thaliana
           polyprenyltransferase 1); 4-hydroxybenzoate
           nonaprenyltransferase | chr4:12328086-12331359 REVERSE
          Length = 407

 Score =  160 bits (405), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/109 (73%), Positives = 93/109 (85%)

Query: 1   SLDLAVVLPLYVAGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEWITGFGIAC 60
           S+  ++VLPLY++GV WTLVYDTIYAHQDKEDD+KVGVKSTALRFGD+TK W+TGFG A 
Sbjct: 280 SIAPSIVLPLYLSGVCWTLVYDTIYAHQDKEDDVKVGVKSTALRFGDNTKLWLTGFGTAS 339

Query: 61  ISSLALSGVSADLGWPFYAFLAAASGHLTWQIWTVDLSSRADCNKKYVN 109
           I  LALSG SADLGW +YA LAAASG L WQI T DLSS ADC++K+V+
Sbjct: 340 IGFLALSGFSADLGWQYYASLAAASGQLGWQIGTADLSSGADCSRKFVS 388