Jatropha Genome Database

JcCB0297821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0297821.10 - phase: 0 /partial
         (252 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26000.1 | Symbols:  | F-box family protein | chr3:9507042-95...   141   5e-34

>AT3G26000.1 | Symbols:  | F-box family protein |
           chr3:9507042-9508542 REVERSE
          Length = 453

 Score =  141 bits (355), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 114/268 (42%), Positives = 139/268 (51%), Gaps = 48/268 (17%)

Query: 1   MALNFSHRPLFPGILPEDNLVSPMRIANGYLVEGIPDKVDNCFDYGRDRGDRCGSQDSVH 60
           MALNFSHRP F   L E+    PM IANG             FD GR      G   SV 
Sbjct: 1   MALNFSHRP-FSSHLSEE----PMMIANGNWCSS--------FDNGRKNTG--GDASSV- 44

Query: 61  KDILDLLPSDPFGMDISTTFTAITGWLEDLEVD----YGGYGRDQVATSGGN-YQLFAGL 115
            DILD+LPSDPFGMDI+ TFTAITGWLEDLE D    YG   RD +    GN  QLFAGL
Sbjct: 45  -DILDVLPSDPFGMDINNTFTAITGWLEDLEDDYNNQYGRRRRDDIWIGDGNRQQLFAGL 103

Query: 116 NFIWNNAMRFQTFPGNM--------GFDNSMNAFRELGNASAHD---AGCLEEKEVGDAS 164
           +F WNNAM+FQ+   +          FD S+ +  +   +S  +    G L+    GD S
Sbjct: 104 SFFWNNAMQFQSSGYSYGSESLFGGAFDGSLFSTCKFPESSGENNGFGGALD----GDGS 159

Query: 165 SHCALGLVCNVDDILSLGNEIMGNGDTGAVDERCVEFHESSGVCSDGDGGAPHGAFGFAL 224
            H A     +VD++LS  +E   NG+     +RC    E + V         H A GF L
Sbjct: 160 CHGAFISASSVDEVLS--HENARNGEVVGSSDRCNNGEEDAYV---------HPAIGFCL 208

Query: 225 GYLGVRDLLVVETVCRSLRSTVRSDPLL 252
            +L  +DLL V  VC+SL +TV  D LL
Sbjct: 209 YHLRGKDLLSVSMVCKSLHTTVCDDTLL 236